Protein : Qrob_P0081060.2 Q. robur
Protein Identifier  ? Qrob_P0081060.2 Organism . Name  Quercus robur
Score  89.1 Score Type  egn
Protein Description  (M=18) K04567 - lysyl-tRNA synthetase, class II [EC:6.1.1.6] Code Enzyme  EC:6.1.1.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 598  
Kegg Orthology  K04567
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0004824 lysine-tRNA ligase activity Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys).
GO:0006430 lysyl-tRNA aminoacylation The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100262532 1 555 + 555 Gaps:2 89.34 619 84.63 0.0 lysyl-tRNA synthetase-like
blastp_kegg lcl|vvi:100242505 1 554 + 554 Gaps:2 89.03 620 84.42 0.0 lysyl-tRNA synthetase-like
blastp_kegg lcl|tcc:TCM_019889 4 556 + 553 Gaps:5 89.40 613 84.12 0.0 Lysyl-tRNA synthetase 1 isoform 1
blastp_kegg lcl|cmo:103492812 5 554 + 550 Gaps:2 79.54 689 85.04 0.0 lysine--tRNA ligase
blastp_kegg lcl|csv:101204394 5 554 + 550 Gaps:2 79.19 692 83.39 0.0 lysine--tRNA ligase-like
blastp_kegg lcl|pmum:103323536 2 558 + 557 Gaps:6 90.75 616 81.93 0.0 lysine--tRNA ligase
blastp_kegg lcl|pper:PRUPE_ppa003157mg 2 558 + 557 Gaps:6 93.63 597 81.57 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0435350 6 556 + 551 Gaps:4 90.12 607 81.90 0.0 lysyl-tRNA synthetase putative (EC:6.1.1.6)
blastp_kegg lcl|gmx:100809106 1 550 + 550 Gaps:4 91.95 596 81.57 0.0 lysine--tRNA ligase-like
blastp_kegg lcl|cit:102615402 4 554 + 551 Gaps:34 88.63 651 77.82 0.0 lysine--tRNA ligase-like
blastp_pdb 3bju_D 17 551 + 535 Gaps:31 97.50 521 61.81 0.0 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_C 17 551 + 535 Gaps:31 97.50 521 61.81 0.0 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_B 17 551 + 535 Gaps:31 97.50 521 61.81 0.0 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_A 17 551 + 535 Gaps:31 97.50 521 61.81 0.0 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3e9i_D 26 547 + 522 Gaps:46 97.36 493 45.00 9e-128 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_C 26 547 + 522 Gaps:46 97.36 493 45.00 9e-128 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_B 26 547 + 522 Gaps:46 97.36 493 45.00 9e-128 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_A 26 547 + 522 Gaps:46 97.36 493 45.00 9e-128 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9h_D 26 547 + 522 Gaps:46 97.36 493 45.00 9e-128 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9h_C 26 547 + 522 Gaps:46 97.36 493 45.00 9e-128 mol:protein length:493 Lysyl-tRNA synthetase
blastp_uniprot_sprot sp|Q9ZPI1|SYK_ARATH 4 554 + 551 Gaps:7 86.90 626 79.04 0.0 Lysine--tRNA ligase OS Arabidopsis thaliana GN At3g11710 PE 2 SV 1
blastp_uniprot_sprot sp|Q6F2U9|SYK_ORYSJ 8 550 + 543 Gaps:8 88.87 602 77.94 0.0 Lysine--tRNA ligase OS Oryza sativa subsp. japonica GN Os03g0586800 PE 2 SV 1
blastp_uniprot_sprot sp|Q43776|SYK_SOLLC 13 549 + 537 Gaps:8 92.01 588 66.17 0.0 Lysine--tRNA ligase OS Solanum lycopersicum GN LYSRS PE 2 SV 1
blastp_uniprot_sprot sp|Q99MN1|SYK_MOUSE 9 551 + 543 Gaps:31 86.72 595 62.60 0.0 Lysine--tRNA ligase OS Mus musculus GN Kars PE 1 SV 1
blastp_uniprot_sprot sp|P37879|SYK_CRIGR 9 551 + 543 Gaps:31 86.43 597 62.02 0.0 Lysine--tRNA ligase OS Cricetulus griseus GN KARS PE 1 SV 1
blastp_uniprot_sprot sp|Q15046|SYK_HUMAN 9 551 + 543 Gaps:31 86.43 597 61.05 0.0 Lysine--tRNA ligase OS Homo sapiens GN KARS PE 1 SV 3
blastp_uniprot_sprot sp|Q9UUE6|SYKC_SCHPO 6 549 + 544 Gaps:38 88.32 591 56.70 0.0 Lysine--tRNA ligase cytoplasmic OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN krs1 PE 3 SV 1
blastp_uniprot_sprot sp|Q22099|SYK_CAEEL 18 550 + 533 Gaps:33 88.46 572 56.72 0.0 Lysine--tRNA ligase OS Caenorhabditis elegans GN krs-1 PE 3 SV 1
blastp_uniprot_sprot sp|P15180|SYKC_YEAST 16 548 + 533 Gaps:39 86.63 591 56.25 0.0 Lysine--tRNA ligase cytoplasmic OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN KRS1 PE 1 SV 2
blastp_uniprot_sprot sp|Q8SS56|SYKC_ENCCU 22 549 + 528 Gaps:38 97.25 510 52.62 3e-172 Probable lysine--tRNA ligase cytoplasmic OS Encephalitozoon cuniculi (strain GB-M1) GN ECU04_0580 PE 3 SV 2

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 554 554 PTHR22594 "Reactome:REACT_71";signature_desc=ASPARTYL/LYSYL-TRNA SYNTHETASE none IPR018150
Gene3D 20 161 142 G3DSA:2.40.50.140 none none IPR012340
Gene3D 195 545 351 G3DSA:3.30.930.10 none none none
PRINTS 234 244 11 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 279 292 14 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 297 314 18 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 250 266 17 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 431 447 17 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PANTHER 1 554 554 PTHR22594:SF4 none none none
TIGRFAM 188 549 362 TIGR00499 "KEGG:00970+6.1.1.6" lysS_bact: lysine--tRNA ligase IPR002313
SUPERFAMILY 17 161 145 SSF50249 none none IPR012340
ProSiteProfiles 219 548 330 PS50862 "Reactome:REACT_71" Aminoacyl-transfer RNA synthetases class-II family profile. IPR006195
SUPERFAMILY 197 547 351 SSF55681 none none none
Pfam 72 150 79 PF01336 none OB-fold nucleic acid binding domain IPR004365
Pfam 197 547 351 PF00152 "Reactome:REACT_71" tRNA synthetases class II (D, K and N) IPR004364
Hamap 25 551 527 MF_00252 "KEGG:00970+6.1.1.6" Lysine--tRNA ligase [lysS]. IPR002313
PIRSF 1 557 557 PIRSF039101 "KEGG:00970+6.1.1.6" none IPR002313

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL1_Delta.F Qrob_Chr11 11 v_AC14YL05_1355 s_2F1WOG_696 10.96 3,25 16,39 lod 25.0121 0.2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf Qrob_Chr11 11 s_1BD29X_620 s_1A5BYY_1671 2.26 1,08 11,24 lod 5.8451 0.037

0 Targeting