Protein : Qrob_P0081050.2 Q. robur
Protein Identifier  ? Qrob_P0081050.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=18) K04567 - lysyl-tRNA synthetase, class II [EC:6.1.1.6] Code Enzyme  EC:6.1.1.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 577  
Kegg Orthology  K04567
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0004824 lysine-tRNA ligase activity Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys).
GO:0006430 lysyl-tRNA aminoacylation The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100262532 4 561 + 558 Gaps:2 89.82 619 83.99 0.0 lysyl-tRNA synthetase-like
blastp_kegg lcl|vvi:100242505 4 560 + 557 Gaps:2 89.52 620 83.78 0.0 lysyl-tRNA synthetase-like
blastp_kegg lcl|tcc:TCM_019889 10 561 + 552 Gaps:5 89.23 613 83.73 0.0 Lysyl-tRNA synthetase 1 isoform 1
blastp_kegg lcl|cmo:103492812 11 560 + 550 Gaps:2 79.54 689 84.49 0.0 lysine--tRNA ligase
blastp_kegg lcl|csv:101204394 11 560 + 550 Gaps:2 79.19 692 83.03 0.0 lysine--tRNA ligase-like
blastp_kegg lcl|pmum:103323536 3 563 + 561 Gaps:6 91.40 616 81.53 0.0 lysine--tRNA ligase
blastp_kegg lcl|pper:PRUPE_ppa003157mg 8 563 + 556 Gaps:6 93.47 597 81.18 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0435350 12 563 + 552 Gaps:4 90.28 607 81.57 0.0 lysyl-tRNA synthetase putative (EC:6.1.1.6)
blastp_kegg lcl|pper:PRUPE_ppa016996mg 1 568 + 568 Gaps:5 97.26 585 79.61 0.0 hypothetical protein
blastp_kegg lcl|gmx:100809106 3 556 + 554 Gaps:4 92.62 596 80.98 0.0 lysine--tRNA ligase-like
blastp_pdb 3bju_D 23 557 + 535 Gaps:31 97.50 521 61.61 0.0 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_C 23 557 + 535 Gaps:31 97.50 521 61.61 0.0 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_B 23 557 + 535 Gaps:31 97.50 521 61.61 0.0 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_A 23 557 + 535 Gaps:31 97.50 521 61.61 0.0 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3e9i_D 32 553 + 522 Gaps:46 97.36 493 44.58 1e-126 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_C 32 553 + 522 Gaps:46 97.36 493 44.58 1e-126 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_B 32 553 + 522 Gaps:46 97.36 493 44.58 1e-126 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_A 32 553 + 522 Gaps:46 97.36 493 44.58 1e-126 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9h_D 32 553 + 522 Gaps:46 97.36 493 44.58 1e-126 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9h_C 32 553 + 522 Gaps:46 97.36 493 44.58 1e-126 mol:protein length:493 Lysyl-tRNA synthetase
blastp_uniprot_sprot sp|Q9ZPI1|SYK_ARATH 10 560 + 551 Gaps:7 86.90 626 78.31 0.0 Lysine--tRNA ligase OS Arabidopsis thaliana GN At3g11710 PE 2 SV 1
blastp_uniprot_sprot sp|Q6F2U9|SYK_ORYSJ 14 556 + 543 Gaps:8 88.87 602 77.57 0.0 Lysine--tRNA ligase OS Oryza sativa subsp. japonica GN Os03g0586800 PE 2 SV 1
blastp_uniprot_sprot sp|Q43776|SYK_SOLLC 3 555 + 553 Gaps:8 94.73 588 64.81 0.0 Lysine--tRNA ligase OS Solanum lycopersicum GN LYSRS PE 2 SV 1
blastp_uniprot_sprot sp|Q99MN1|SYK_MOUSE 3 563 + 561 Gaps:31 89.75 595 60.67 0.0 Lysine--tRNA ligase OS Mus musculus GN Kars PE 1 SV 1
blastp_uniprot_sprot sp|P37879|SYK_CRIGR 15 557 + 543 Gaps:31 86.43 597 61.82 0.0 Lysine--tRNA ligase OS Cricetulus griseus GN KARS PE 1 SV 1
blastp_uniprot_sprot sp|Q15046|SYK_HUMAN 15 557 + 543 Gaps:31 86.43 597 60.85 0.0 Lysine--tRNA ligase OS Homo sapiens GN KARS PE 1 SV 3
blastp_uniprot_sprot sp|Q9UUE6|SYKC_SCHPO 12 555 + 544 Gaps:38 88.32 591 56.70 0.0 Lysine--tRNA ligase cytoplasmic OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN krs1 PE 3 SV 1
blastp_uniprot_sprot sp|Q22099|SYK_CAEEL 24 556 + 533 Gaps:33 88.46 572 56.32 0.0 Lysine--tRNA ligase OS Caenorhabditis elegans GN krs-1 PE 3 SV 1
blastp_uniprot_sprot sp|P15180|SYKC_YEAST 22 554 + 533 Gaps:39 86.63 591 55.66 0.0 Lysine--tRNA ligase cytoplasmic OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN KRS1 PE 1 SV 2
blastp_uniprot_sprot sp|Q8SS56|SYKC_ENCCU 28 555 + 528 Gaps:38 97.25 510 52.42 2e-172 Probable lysine--tRNA ligase cytoplasmic OS Encephalitozoon cuniculi (strain GB-M1) GN ECU04_0580 PE 3 SV 2

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PIRSF 2 566 565 PIRSF039101 "KEGG:00970+6.1.1.6" none IPR002313
Gene3D 202 551 350 G3DSA:3.30.930.10 none none none
TIGRFAM 195 555 361 TIGR00499 "KEGG:00970+6.1.1.6" lysS_bact: lysine--tRNA ligase IPR002313
ProSiteProfiles 225 554 330 PS50862 "Reactome:REACT_71" Aminoacyl-transfer RNA synthetases class-II family profile. IPR006195
Pfam 204 553 350 PF00152 "Reactome:REACT_71" tRNA synthetases class II (D, K and N) IPR004364
SUPERFAMILY 203 553 351 SSF55681 none none none
PANTHER 3 560 558 PTHR22594:SF4 none none none
PANTHER 3 560 558 PTHR22594 "Reactome:REACT_71";signature_desc=ASPARTYL/LYSYL-TRNA SYNTHETASE none IPR018150
Gene3D 26 167 142 G3DSA:2.40.50.140 none none IPR012340
Hamap 31 557 527 MF_00252 "KEGG:00970+6.1.1.6" Lysine--tRNA ligase [lysS]. IPR002313
SUPERFAMILY 23 167 145 SSF50249 none none IPR012340
PRINTS 303 320 18 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 256 272 17 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 437 453 17 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 285 298 14 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 240 250 11 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
Pfam 78 156 79 PF01336 none OB-fold nucleic acid binding domain IPR004365

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL1_Delta.F Qrob_Chr11 11 v_AC14YL05_1355 s_2F1WOG_696 10.96 3,25 16,39 lod 25.0121 0.2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf Qrob_Chr11 11 s_1BD29X_620 s_1A5BYY_1671 2.26 1,08 11,24 lod 5.8451 0.037

0 Targeting