Protein : Qrob_P0081000.2 Q. robur
Protein Identifier  ? Qrob_P0081000.2 Organism . Name  Quercus robur
Score  92.0 Score Type  egn
Protein Description  (M=18) K04567 - lysyl-tRNA synthetase, class II [EC:6.1.1.6] Code Enzyme  EC:6.1.1.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 411  
Kegg Orthology  K04567
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0004824 lysine-tRNA ligase activity Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys).
GO:0006430 lysyl-tRNA aminoacylation The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_019889 3 364 + 362 Gaps:10 59.71 613 86.89 0.0 Lysyl-tRNA synthetase 1 isoform 1
blastp_kegg lcl|csv:101229946 15 363 + 349 Gaps:7 98.07 363 87.92 0.0 lysine--tRNA ligase-like
blastp_kegg lcl|vvi:100262532 3 364 + 362 Gaps:10 59.13 619 86.61 0.0 lysyl-tRNA synthetase-like
blastp_kegg lcl|vvi:100242505 3 363 + 361 Gaps:10 58.87 620 86.58 0.0 lysyl-tRNA synthetase-like
blastp_kegg lcl|cmo:103492812 3 363 + 361 Gaps:10 52.98 689 87.12 0.0 lysine--tRNA ligase
blastp_kegg lcl|csv:101204394 3 363 + 361 Gaps:10 52.75 692 86.85 0.0 lysine--tRNA ligase-like
blastp_kegg lcl|pop:POPTR_0018s09760g 3 366 + 364 Gaps:10 61.54 598 85.33 0.0 POPTRDRAFT_262154 hypothetical protein
blastp_kegg lcl|pop:POPTR_0006s17970g 3 366 + 364 Gaps:10 61.03 603 85.60 0.0 Lysyl-tRNA synthetase family protein
blastp_kegg lcl|pmum:103323536 3 366 + 364 Gaps:11 59.90 616 84.82 0.0 lysine--tRNA ligase
blastp_kegg lcl|sly:101251001 3 367 + 365 Gaps:10 60.99 605 85.09 0.0 lysine--tRNA ligase-like
blastp_pdb 3bju_D 13 360 + 348 Gaps:9 68.52 521 66.39 6e-174 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_C 13 360 + 348 Gaps:9 68.52 521 66.39 6e-174 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_B 13 360 + 348 Gaps:9 68.52 521 66.39 6e-174 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_A 13 360 + 348 Gaps:9 68.52 521 66.39 6e-174 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3e9i_D 13 356 + 344 Gaps:18 68.97 493 50.88 6e-115 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_C 13 356 + 344 Gaps:18 68.97 493 50.88 6e-115 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_B 13 356 + 344 Gaps:18 68.97 493 50.88 6e-115 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_A 13 356 + 344 Gaps:18 68.97 493 50.88 6e-115 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9h_D 13 356 + 344 Gaps:18 68.97 493 50.88 6e-115 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9h_C 13 356 + 344 Gaps:18 68.97 493 50.88 6e-115 mol:protein length:493 Lysyl-tRNA synthetase
blastp_uniprot_sprot sp|Q6F2U9|SYK_ORYSJ 13 359 + 347 Gaps:7 58.80 602 84.75 0.0 Lysine--tRNA ligase OS Oryza sativa subsp. japonica GN Os03g0586800 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZPI1|SYK_ARATH 3 363 + 361 Gaps:10 58.31 626 80.82 0.0 Lysine--tRNA ligase OS Arabidopsis thaliana GN At3g11710 PE 2 SV 1
blastp_uniprot_sprot sp|Q43776|SYK_SOLLC 3 358 + 356 Gaps:10 61.22 588 71.67 0.0 Lysine--tRNA ligase OS Solanum lycopersicum GN LYSRS PE 2 SV 1
blastp_uniprot_sprot sp|Q99MN1|SYK_MOUSE 13 366 + 354 Gaps:9 61.01 595 66.94 5e-176 Lysine--tRNA ligase OS Mus musculus GN Kars PE 1 SV 1
blastp_uniprot_sprot sp|P37879|SYK_CRIGR 13 360 + 348 Gaps:9 59.80 597 67.51 4e-175 Lysine--tRNA ligase OS Cricetulus griseus GN KARS PE 1 SV 1
blastp_uniprot_sprot sp|Q15046|SYK_HUMAN 13 360 + 348 Gaps:9 59.80 597 66.39 3e-173 Lysine--tRNA ligase OS Homo sapiens GN KARS PE 1 SV 3
blastp_uniprot_sprot sp|Q9UUE6|SYKC_SCHPO 13 358 + 346 Gaps:9 60.07 591 63.38 2e-161 Lysine--tRNA ligase cytoplasmic OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN krs1 PE 3 SV 1
blastp_uniprot_sprot sp|Q22099|SYK_CAEEL 13 364 + 352 Gaps:10 63.29 572 62.15 3e-161 Lysine--tRNA ligase OS Caenorhabditis elegans GN krs-1 PE 3 SV 1
blastp_uniprot_sprot sp|P15180|SYKC_YEAST 13 357 + 345 Gaps:11 59.90 591 62.15 2e-154 Lysine--tRNA ligase cytoplasmic OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN KRS1 PE 1 SV 2
blastp_uniprot_sprot sp|C4V8R9|SYKC_NOSCE 13 360 + 348 Gaps:10 69.65 514 58.66 8e-150 Probable lysine--tRNA ligase cytoplasmic OS Nosema ceranae (strain BRL01) GN NCER_100909 PE 3 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 35 357 323 PS50862 "Reactome:REACT_71" Aminoacyl-transfer RNA synthetases class-II family profile. IPR006195
PANTHER 13 363 351 PTHR22594 "Reactome:REACT_71";signature_desc=ASPARTYL/LYSYL-TRNA SYNTHETASE none IPR018150
Pfam 14 356 343 PF00152 "Reactome:REACT_71" tRNA synthetases class II (D, K and N) IPR004364
TIGRFAM 13 358 346 TIGR00499 "KEGG:00970+6.1.1.6" lysS_bact: lysine--tRNA ligase IPR002313
PRINTS 50 60 11 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 240 256 17 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 66 82 17 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 95 108 14 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 113 130 18 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PANTHER 13 363 351 PTHR22594:SF4 none none none
SUPERFAMILY 13 356 344 SSF55681 none none none
Gene3D 13 354 342 G3DSA:3.30.930.10 none none none

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL1_Delta.F Qrob_Chr11 11 v_AC14YL05_1355 s_2F1WOG_696 10.96 3,25 16,39 lod 25.0121 0.2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf Qrob_Chr11 11 s_1BD29X_620 s_1A5BYY_1671 2.26 1,08 11,24 lod 5.8451 0.037

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 16   Secretory pathway 4 0.573 0.153 NON-PLANT 16