Protein : Qrob_P0080590.2 Q. robur
Protein Identifier  ? Qrob_P0080590.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=55) PTHR10217:SF465 - CYCLIC NUCLEOTIDE-GATED ION CHANNEL 11-RELATED (PTHR10217:SF465) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 269  
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0 Synonyms

0 GO Terms

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103411000 61 260 + 200 Gaps:17 76.54 260 41.21 1e-41 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|pper:PRUPE_ppa016982mg 61 260 + 200 Gaps:13 35.01 557 44.62 6e-41 hypothetical protein
blastp_kegg lcl|pmum:103319382 61 260 + 200 Gaps:13 28.97 673 45.13 9e-41 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|pxb:103926820 61 260 + 200 Gaps:17 13.69 1454 40.70 2e-39 uncharacterized LOC103926820
blastp_kegg lcl|mdm:103441842 61 260 + 200 Gaps:17 31.19 638 41.71 2e-39 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|pxb:103928207 61 260 + 200 Gaps:17 26.89 740 41.21 5e-38 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|pper:PRUPE_ppa003186mg 78 260 + 183 Gaps:23 31.26 595 39.25 5e-35 hypothetical protein
blastp_kegg lcl|fve:101314615 70 260 + 191 Gaps:14 24.93 742 41.08 5e-35 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|pmum:103333657 53 260 + 208 Gaps:17 28.64 667 44.50 9e-35 cyclic nucleotide-gated ion channel 1-like
blastp_kegg lcl|fve:101308225 61 260 + 200 Gaps:18 29.74 659 39.29 1e-33 cyclic nucleotide-gated ion channel 1-like
blastp_pdb 1wgp_A 149 258 + 110 Gaps:6 77.37 137 42.45 2e-17 mol:protein length:137 Probable cyclic nucleotide-gated ion channel
blastp_uniprot_sprot sp|O65717|CNGC1_ARATH 53 260 + 208 Gaps:19 26.68 716 40.84 8e-32 Cyclic nucleotide-gated ion channel 1 OS Arabidopsis thaliana GN CNGC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LNJ0|CNG10_ARATH 57 260 + 204 Gaps:14 27.29 711 36.60 1e-29 Probable cyclic nucleotide-gated ion channel 10 OS Arabidopsis thaliana GN CNGC10 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LD40|CNG13_ARATH 57 258 + 202 Gaps:12 27.59 696 36.98 1e-28 Putative cyclic nucleotide-gated ion channel 13 OS Arabidopsis thaliana GN CNGC13 PE 3 SV 2
blastp_uniprot_sprot sp|Q9M0A4|CNGC9_ARATH 59 260 + 202 Gaps:21 25.24 733 39.46 5e-28 Putative cyclic nucleotide-gated ion channel 9 OS Arabidopsis thaliana GN CNGC9 PE 1 SV 1
blastp_uniprot_sprot sp|O82226|CNGC6_ARATH 59 260 + 202 Gaps:19 24.77 747 38.38 1e-27 Probable cyclic nucleotide-gated ion channel 6 OS Arabidopsis thaliana GN CNGC6 PE 1 SV 2
blastp_uniprot_sprot sp|Q9FXH6|CNGC8_ARATH 59 260 + 202 Gaps:21 24.57 753 37.84 2e-26 Putative cyclic nucleotide-gated ion channel 8 OS Arabidopsis thaliana GN CNGC8 PE 3 SV 2
blastp_uniprot_sprot sp|Q9S9N5|CNGC7_ARATH 59 260 + 202 Gaps:21 25.07 738 37.30 6e-26 Putative cyclic nucleotide-gated ion channel 7 OS Arabidopsis thaliana GN CNGC7 PE 3 SV 1
blastp_uniprot_sprot sp|Q8RWS9|CNGC5_ARATH 59 260 + 202 Gaps:21 25.80 717 37.30 2e-25 Probable cyclic nucleotide-gated ion channel 5 OS Arabidopsis thaliana GN CNGC5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SKD7|CNGC3_ARATH 57 260 + 204 Gaps:14 27.20 706 35.94 1e-22 Probable cyclic nucleotide-gated ion channel 3 OS Arabidopsis thaliana GN CNGC3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SL29|CNG15_ARATH 74 260 + 187 Gaps:10 26.40 678 31.84 2e-22 Putative cyclic nucleotide-gated ion channel 15 OS Arabidopsis thaliana GN CNGC15 PE 3 SV 1
rpsblast_cdd gnl|CDD|28920 149 260 + 112 Gaps:14 85.22 115 25.51 3e-07 cd00038 CAP_ED effector domain of the CAP family of transcription factors members include CAP (or cAMP receptor protein (CRP)) which binds cAMP FNR (fumarate and nitrate reduction) which uses an iron-sulfur cluster to sense oxygen) and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues the best studied is the prokaryotic catabolite gene activator CAP where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded antiparallel beta-barrel structure three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel CooA is a homodimeric transcription factor that belongs to CAP family cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain cAPK's are composed of two different subunits a catalytic chain and a regulatory chain which contains both copies of the domain cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section also found in vertebrate cyclic nucleotide-gated ion-channels.
rpsblast_cdd gnl|CDD|197516 149 217 + 69 none 57.50 120 31.88 9e-07 smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains present in ion channels and cNMP-dependent kinases.
rpsblast_kog gnl|CDD|35719 64 267 + 204 Gaps:26 26.96 727 30.10 6e-26 KOG0498 KOG0498 KOG0498 K+-channel ERG and related proteins contain PAS/PAC sensor domain [Inorganic ion transport and metabolism Signal transduction mechanisms].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 149 260 112 G3DSA:2.60.120.10 none none IPR014710
PANTHER 70 260 191 PTHR10217:SF465 none none none
SUPERFAMILY 67 217 151 SSF51206 none none IPR018490
Coils 21 70 50 Coil none none none
Pfam 163 217 55 PF00027 none Cyclic nucleotide-binding domain IPR000595
Gene3D 72 131 60 G3DSA:1.10.287.630 none none none
PANTHER 70 260 191 PTHR10217 none none none
ProSiteProfiles 149 228 80 PS50042 none cAMP/cGMP binding motif profile. IPR000595

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL1_Delta.F Qrob_Chr11 11 v_AC14YL05_1355 s_2F1WOG_696 10.96 3,25 16,39 lod 25.0121 0.2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf Qrob_Chr11 11 s_1BD29X_620 s_1A5BYY_1671 2.26 1,08 11,24 lod 5.8451 0.037

0 Targeting