Protein : Qrob_P0080420.2 Q. robur
Protein Identifier  ? Qrob_P0080420.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K16278 - E3 ubiquitin-protein ligase HOS1 [EC:2.3.2.27] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 962  
Kegg Orthology  K16278
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

0 GO Terms

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100241255 1 961 + 961 Gaps:25 100.00 976 67.01 0.0 E3 ubiquitin-protein ligase HOS1-like
blastp_kegg lcl|pxb:103958398 1 957 + 957 Gaps:18 99.49 972 66.49 0.0 E3 ubiquitin-protein ligase HOS1
blastp_kegg lcl|mdm:103432994 1 956 + 956 Gaps:20 99.59 972 65.19 0.0 E3 ubiquitin-protein ligase HOS1
blastp_kegg lcl|cit:102618523 1 956 + 956 Gaps:29 99.59 973 65.02 0.0 E3 ubiquitin-protein ligase HOS1-like
blastp_kegg lcl|rcu:RCOM_0005420 6 956 + 951 Gaps:35 98.97 968 63.88 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa000974mg 37 956 + 920 Gaps:36 97.46 944 66.41 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_015921 5 961 + 957 Gaps:26 99.48 970 62.90 0.0 HOS1
blastp_kegg lcl|fve:101294265 1 948 + 948 Gaps:30 98.66 967 64.78 0.0 E3 ubiquitin-protein ligase HOS1-like
blastp_kegg lcl|pmum:103337060 39 956 + 918 Gaps:23 98.41 946 65.63 0.0 E3 ubiquitin-protein ligase HOS1
blastp_kegg lcl|pop:POPTR_0003s07750g 5 961 + 957 Gaps:37 100.00 936 63.68 0.0 POPTRDRAFT_852358 hypothetical protein
blastp_uniprot_sprot sp|Q84JU6|HOS1_ARATH 20 942 + 923 Gaps:48 97.63 927 56.24 0.0 E3 ubiquitin-protein ligase HOS1 OS Arabidopsis thaliana GN HOS1 PE 1 SV 1
rpsblast_cdd gnl|CDD|206105 371 624 + 254 Gaps:47 95.56 225 32.09 3e-37 pfam13934 ELYS Nuclear pore complex assembly. ELYS (embryonic large molecule derived from yolk sac) is conserved from fungi such Aspergillus nidulans and Schizosaccharomyces pombe to human. It is important for the assembly of the nuclear pore complex.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 551 686 136 PTHR10044:SF96 none none none
PANTHER 103 533 431 PTHR10044:SF96 none none none
Pfam 331 624 294 PF13934 none Nuclear pore complex assembly IPR025151
PANTHER 551 686 136 PTHR10044 none none none
PANTHER 103 533 431 PTHR10044 none none none

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL1_Delta.F Qrob_Chr11 11 v_AC14YL05_1355 s_2F1WOG_696 10.96 3,25 16,39 lod 25.0121 0.2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf Qrob_Chr11 11 s_1BD29X_620 s_1A5BYY_1671 2.26 1,08 11,24 lod 5.8451 0.037

0 Targeting