Protein : Qrob_P0080360.2 Q. robur
Protein Identifier  ? Qrob_P0080360.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=17) PF05553 - Cotton fibre expressed protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 613  
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0 Synonyms

0 GO Terms

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa018739mg 1 612 + 612 Gaps:36 100.00 588 62.76 0.0 hypothetical protein
blastp_kegg lcl|fve:101297935 1 612 + 612 Gaps:49 99.31 581 59.97 1e-172 uncharacterized protein LOC101297935
blastp_kegg lcl|pop:POPTR_0003s07770g 1 612 + 612 Gaps:57 98.79 580 61.26 2e-166 POPTRDRAFT_757057 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0006170 1 612 + 612 Gaps:73 100.00 565 61.59 9e-162 hypothetical protein
blastp_kegg lcl|pmum:103337057 1 612 + 612 Gaps:63 99.29 565 61.50 8e-160 uncharacterized protein DDB_G0271670
blastp_kegg lcl|pxb:103934116 1 612 + 612 Gaps:48 99.32 584 56.21 2e-157 uncharacterized LOC103934116
blastp_kegg lcl|pxb:103927342 1 612 + 612 Gaps:48 99.32 584 56.21 1e-156 serine/arginine repetitive matrix protein 1-like
blastp_kegg lcl|pxb:103927361 1 612 + 612 Gaps:48 100.00 580 56.21 2e-156 serine/arginine repetitive matrix protein 1-like
blastp_kegg lcl|tcc:TCM_015918 1 612 + 612 Gaps:75 88.58 613 61.51 1e-154 Hydroxyproline-rich glycoprotein family protein putative
blastp_kegg lcl|pop:POPTR_0001s15480g 1 497 + 497 Gaps:42 82.59 563 63.66 1e-142 hypothetical protein
rpsblast_cdd gnl|CDD|203275 572 608 + 37 none 97.37 38 56.76 8e-10 pfam05553 DUF761 Cotton fibre expressed protein. This family consists of several plant proteins of unknown function. Three of the sequences (from Gossypium hirsutum) in this family are described as cotton fibre expressed proteins. The remaining sequences found in Arabidopsis thaliana are uncharacterized.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 83 612 530 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 573 608 36 PF05553 none Cotton fibre expressed protein IPR008480
Phobius 31 48 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 60 82 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 30 30 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 49 59 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

1 Localization

Analysis Start End Length
TMHMM 31 53 22

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL1_Delta.F Qrob_Chr11 11 v_AC14YL05_1355 s_2F1WOG_696 10.96 3,25 16,39 lod 25.0121 0.2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf Qrob_Chr11 11 s_1BD29X_620 s_1A5BYY_1671 2.26 1,08 11,24 lod 5.8451 0.037

0 Targeting