Protein : Qrob_P0080250.2 Q. robur
Protein Identifier  ? Qrob_P0080250.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=29) PF04578//PF13968 - Protein of unknown function, DUF594 // Domain of unknown function (DUF4220) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 821  
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0 Synonyms

0 GO Terms

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0001s02970g 9 820 + 812 Gaps:103 99.45 729 54.48 0.0 hypothetical protein
blastp_kegg lcl|pxb:103961896 9 820 + 812 Gaps:105 99.07 756 52.87 0.0 uncharacterized LOC103961896
blastp_kegg lcl|tcc:TCM_016622 6 820 + 815 Gaps:81 99.50 800 51.38 0.0 hypothetical protein
blastp_kegg lcl|mdm:103405164 9 820 + 812 Gaps:128 99.05 739 54.10 0.0 uncharacterized LOC103405164
blastp_kegg lcl|mdm:103434679 9 820 + 812 Gaps:91 99.08 760 50.60 0.0 uncharacterized LOC103434679
blastp_kegg lcl|pmum:103324616 1 820 + 820 Gaps:121 100.00 715 52.31 0.0 uncharacterized LOC103324616
blastp_kegg lcl|ath:AT5G45540 4 818 + 815 Gaps:182 99.75 803 45.44 0.0 hypothetical protein
blastp_kegg lcl|pxb:103960820 9 820 + 812 Gaps:112 99.05 739 50.00 0.0 uncharacterized LOC103960820
blastp_kegg lcl|aly:ARALYDRAFT_494429 10 818 + 809 Gaps:167 98.99 796 45.05 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_006G041300g 13 818 + 806 Gaps:216 97.72 923 40.80 0.0 hypothetical protein
rpsblast_cdd gnl|CDD|206138 54 457 + 404 Gaps:60 100.00 362 41.44 1e-90 pfam13968 DUF4220 Domain of unknown function (DUF4220). This family is found in plants and is often associated with DUF294 pfam04578.
rpsblast_cdd gnl|CDD|191035 747 801 + 55 none 93.22 59 49.09 5e-17 pfam04578 DUF594 Protein of unknown function DUF594.

23 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 54 456 403 PF13968 none Domain of unknown function (DUF4220) IPR025315
Phobius 365 386 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 748 801 54 PF04578 none Protein of unknown function, DUF594 IPR007658
Phobius 176 192 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 150 170 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 653 809 157 PTHR31325 none none none
PANTHER 1 83 83 PTHR31325 none none none
Phobius 39 49 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 334 353 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 18 18 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 73 120 48 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 653 809 157 PTHR31325:SF0 none none none
PANTHER 1 83 83 PTHR31325:SF0 none none none
Phobius 193 333 141 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 144 149 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 387 820 434 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 354 364 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 19 38 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 117 584 468 PTHR31325 none none none
Phobius 50 72 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 171 175 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 121 143 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 117 584 468 PTHR31325:SF0 none none none

6 Localization

Analysis Start End Length
TMHMM 50 72 22
TMHMM 15 37 22
TMHMM 149 171 22
TMHMM 330 352 22
TMHMM 120 142 22
TMHMM 364 386 22

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL1_Delta.F Qrob_Chr11 11 v_AC14YL05_1355 s_2F1WOG_696 10.96 3,25 16,39 lod 25.0121 0.2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf Qrob_Chr11 11 s_1BD29X_620 s_1A5BYY_1671 2.26 1,08 11,24 lod 5.8451 0.037

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 32   Secretory pathway 2 0.926 0.038 NON-PLANT 32