Protein : Qrob_P0078700.2 Q. robur
Protein Identifier  ? Qrob_P0078700.2 Organism . Name  Quercus robur
Score  22.5 Score Type  egn
Protein Description  (M=1) KOG2190//KOG2192 - PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification General function prediction only]. // PolyC-binding hnRNP-K protein HRB57A/hnRNP contains KH domain [RNA processing and modification General function prediction only]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 275  
Kegg Orthology  K13162
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.

17 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pda:103704613 12 256 + 245 Gaps:11 49.39 490 72.73 3e-114 poly(rC)-binding protein 3-like
blastp_kegg lcl|pvu:PHAVU_009G235900g 12 274 + 263 Gaps:5 58.50 441 67.83 2e-113 hypothetical protein
blastp_kegg lcl|pmum:103323647 12 245 + 234 Gaps:32 50.39 512 68.60 2e-112 poly(rC)-binding protein 3
blastp_kegg lcl|pper:PRUPE_ppa004405mg 12 245 + 234 Gaps:32 50.39 512 68.60 7e-112 hypothetical protein
blastp_kegg lcl|vvi:100261643 12 246 + 235 Gaps:8 48.71 466 74.89 4e-110 KH domain-containing protein At4g18375-like
blastp_kegg lcl|mdm:103446101 13 245 + 233 Gaps:31 51.00 498 68.90 4e-110 poly(rC)-binding protein 3-like
blastp_kegg lcl|pxb:103929360 13 245 + 233 Gaps:31 51.00 498 68.90 6e-110 poly(rC)-binding protein 3-like
blastp_kegg lcl|gmx:100815466 12 274 + 263 Gaps:6 58.60 442 69.11 2e-109 KH domain-containing protein At4g18375-like
blastp_kegg lcl|gmx:100817448 12 274 + 263 Gaps:6 58.47 443 69.11 5e-109 poly(rC)-binding protein 3-like
blastp_kegg lcl|pxb:103950460 13 245 + 233 Gaps:33 51.00 502 68.36 2e-108 poly(rC)-binding protein 2
blastp_pdb 1khm_A 141 221 + 81 Gaps:5 87.64 89 35.90 1e-06 mol:protein length:89 PROTEIN (HNRNP K)
blastp_pdb 1j5k_A 141 221 + 81 Gaps:5 87.64 89 35.90 3e-06 mol:protein length:89 Heterogeneous nuclear ribonucleoprotein K
rpsblast_cdd gnl|CDD|29002 152 215 + 64 none 100.00 64 31.25 1e-08 cd00105 KH-I K homology RNA-binding domain type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that belong to different protein folds but they share a single KH motif. The KH motif is folded into a beta alpha alpha beta unit. In addition to the core type II KH domains (e.g. ribosomal protein S3) include N-terminal extension and type I KH domains (e.g. hnRNP K) contain C-terminal extension..
rpsblast_cdd gnl|CDD|197652 149 218 + 70 Gaps:2 100.00 68 26.47 3e-08 smart00322 KH K homology RNA-binding domain.
rpsblast_cdd gnl|CDD|200928 152 214 + 63 Gaps:4 100.00 59 35.59 3e-08 pfam00013 KH_1 KH domain. KH motifs bind RNA in vitro. Autoantibodies to Nova a KH domain protein cause paraneoplastic opsoclonus ataxia.
rpsblast_kog gnl|CDD|37401 21 261 + 241 Gaps:31 56.08 485 18.01 6e-12 KOG2190 KOG2190 KOG2190 PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification General function prediction only].
rpsblast_kog gnl|CDD|37403 127 223 + 97 Gaps:6 23.85 390 35.48 5e-09 KOG2192 KOG2192 KOG2192 PolyC-binding hnRNP-K protein HRB57A/hnRNP contains KH domain [RNA processing and modification General function prediction only].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 7 47 41 G3DSA:3.30.1370.10 none none IPR004088
ProSiteProfiles 150 214 65 PS50084 none Type-1 KH domain profile. IPR004088
PANTHER 12 269 258 PTHR10288 none none none
Gene3D 149 221 73 G3DSA:3.30.1370.10 none none IPR004088
SMART 149 219 71 SM00322 none K homology RNA-binding domain IPR004087
SUPERFAMILY 150 224 75 SSF54791 none none IPR004088
PANTHER 12 269 258 PTHR10288:SF132 none none none
Pfam 152 214 63 PF00013 none KH domain IPR004088

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting