Protein : Qrob_P0078690.2 Q. robur
Protein Identifier  ? Qrob_P0078690.2 Organism . Name  Quercus robur
Score  87.1 Score Type  egn
Protein Description  (M=3) PTHR10288:SF132 - ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40-RELATED (PTHR10288:SF132) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 233  
Kegg Orthology  K13162
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103323647 1 199 + 199 Gaps:26 43.55 512 69.51 4e-92 poly(rC)-binding protein 3
blastp_kegg lcl|pper:PRUPE_ppa004405mg 1 199 + 199 Gaps:26 43.55 512 69.06 2e-90 hypothetical protein
blastp_kegg lcl|mdm:103412370 1 205 + 205 Gaps:23 63.37 344 69.27 4e-90 PAB1-binding protein 2-like
blastp_kegg lcl|vvi:100261643 1 199 + 199 Gaps:13 45.06 466 72.38 5e-90 KH domain-containing protein At4g18375-like
blastp_kegg lcl|fve:101295410 1 199 + 199 Gaps:32 43.78 482 71.09 8e-89 poly(rC)-binding protein 3-like
blastp_kegg lcl|mdm:103446101 1 199 + 199 Gaps:23 42.57 498 70.75 2e-88 poly(rC)-binding protein 3-like
blastp_kegg lcl|pxb:103950460 1 199 + 199 Gaps:25 42.63 502 70.56 2e-87 poly(rC)-binding protein 2
blastp_kegg lcl|pxb:103929360 1 199 + 199 Gaps:23 42.57 498 69.81 5e-87 poly(rC)-binding protein 3-like
blastp_kegg lcl|mdm:103451016 1 199 + 199 Gaps:25 42.63 502 68.22 3e-86 poly(rC)-binding protein 3
blastp_kegg lcl|cmo:103492560 1 199 + 199 Gaps:24 44.23 468 69.57 3e-81 poly(rC)-binding protein 3
blastp_pdb 2jzx_A 68 196 + 129 Gaps:11 73.75 160 42.37 9e-14 mol:protein length:160 Poly(rC)-binding protein 2
blastp_uniprot_sprot sp|P57721|PCBP3_HUMAN 68 196 + 129 Gaps:13 31.81 371 42.37 1e-13 Poly(rC)-binding protein 3 OS Homo sapiens GN PCBP3 PE 2 SV 2
blastp_uniprot_sprot sp|P57722|PCBP3_MOUSE 68 196 + 129 Gaps:13 31.81 371 42.37 1e-13 Poly(rC)-binding protein 3 OS Mus musculus GN Pcbp3 PE 2 SV 3
blastp_uniprot_sprot sp|Q61990|PCBP2_MOUSE 68 196 + 129 Gaps:11 32.60 362 42.37 9e-13 Poly(rC)-binding protein 2 OS Mus musculus GN Pcbp2 PE 1 SV 1
blastp_uniprot_sprot sp|Q15366|PCBP2_HUMAN 68 196 + 129 Gaps:11 32.33 365 42.37 1e-12 Poly(rC)-binding protein 2 OS Homo sapiens GN PCBP2 PE 1 SV 1
blastp_uniprot_sprot sp|O19048|PCBP1_RABIT 68 196 + 129 Gaps:11 33.15 356 41.53 4e-12 Poly(rC)-binding protein 1 OS Oryctolagus cuniculus GN PCBP1 PE 2 SV 1
blastp_uniprot_sprot sp|P60335|PCBP1_MOUSE 68 196 + 129 Gaps:11 33.15 356 41.53 4e-12 Poly(rC)-binding protein 1 OS Mus musculus GN Pcbp1 PE 1 SV 1
blastp_uniprot_sprot sp|Q15365|PCBP1_HUMAN 68 196 + 129 Gaps:11 33.15 356 41.53 4e-12 Poly(rC)-binding protein 1 OS Homo sapiens GN PCBP1 PE 1 SV 2
blastp_uniprot_sprot sp|Q5E9A3|PCBP1_BOVIN 68 196 + 129 Gaps:11 33.15 356 41.53 4e-12 Poly(rC)-binding protein 1 OS Bos taurus GN PCBP1 PE 2 SV 1
blastp_uniprot_sprot sp|P58223|Y4837_ARATH 67 201 + 135 Gaps:16 23.60 606 33.57 9e-11 KH domain-containing protein At4g18375 OS Arabidopsis thaliana GN At4g18375 PE 2 SV 1
blastp_uniprot_sprot sp|P57723|PCBP4_HUMAN 68 196 + 129 Gaps:13 29.28 403 35.59 1e-10 Poly(rC)-binding protein 4 OS Homo sapiens GN PCBP4 PE 2 SV 1
rpsblast_cdd gnl|CDD|29006 67 136 + 70 Gaps:7 100.00 65 46.15 3e-12 cd02396 PCBP_like_KH K homology RNA-binding domain PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members similar to the poly(C) binding proteins (PCBPs) and Nova containing three KH domains with the first and second domains which are represented here in tandem arrangement followed by a large spacer region with the third domain near the C-terminal end of the protein. The poly(C) binding proteins (PCBPs) can be divided into two groups hnRNPs K/J and the alphaCPs which share a triple KH domain configuration and poly(C) binding specificity. They play roles in mRNA stabilization translational activation and translational silencing. Nova-1 and Nova-2 are nuclear RNA-binding proteins that regulate splicing. This group also contains plant proteins that seem to have two tandem repeat arrrangements like Hen4 a protein that plays a role in AGAMOUS (AG) pre-mRNA processing and important step in plant development. In general KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins transcription factors and post-transcriptional modifiers of mRNA..
rpsblast_cdd gnl|CDD|29002 67 120 + 54 none 84.38 64 44.44 2e-08 cd00105 KH-I K homology RNA-binding domain type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that belong to different protein folds but they share a single KH motif. The KH motif is folded into a beta alpha alpha beta unit. In addition to the core type II KH domains (e.g. ribosomal protein S3) include N-terminal extension and type I KH domains (e.g. hnRNP K) contain C-terminal extension..
rpsblast_cdd gnl|CDD|200928 67 120 + 54 Gaps:4 84.75 59 46.00 2e-07 pfam00013 KH_1 KH domain. KH motifs bind RNA in vitro. Autoantibodies to Nova a KH domain protein cause paraneoplastic opsoclonus ataxia.
rpsblast_cdd gnl|CDD|205195 76 117 + 42 none 100.00 42 45.24 3e-07 pfam13014 KH_3 KH domain. KH motifs bind RNA in vitro. This RNA-binding domain is required for the efficient anchoring of ASH1-mRNA to the distal tip of the daughter cell. ASH1 is a specific repressor of transcription that localizes asymmetrically to the daughter cell nucleus. RNA localisation is a widespread mechanism for achieving localised protein synthesis.
rpsblast_cdd gnl|CDD|197652 69 120 + 52 Gaps:2 73.53 68 42.00 5e-07 smart00322 KH K homology RNA-binding domain.
rpsblast_kog gnl|CDD|37401 15 204 + 190 Gaps:52 77.53 485 38.03 1e-25 KOG2190 KOG2190 KOG2190 PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification General function prediction only].
rpsblast_kog gnl|CDD|37402 24 196 + 173 Gaps:18 41.04 402 27.88 5e-08 KOG2191 KOG2191 KOG2191 RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification General function prediction only].
rpsblast_kog gnl|CDD|36889 68 194 + 127 Gaps:9 20.00 600 29.17 5e-08 KOG1676 KOG1676 KOG1676 K-homology type RNA binding proteins [RNA processing and modification].

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 59 130 72 SSF54791 none none IPR004088
Gene3D 161 200 40 G3DSA:3.30.1370.10 none none IPR004088
Gene3D 55 120 66 G3DSA:3.30.1370.10 none none IPR004088
ProSiteProfiles 160 196 37 PS50084 none Type-1 KH domain profile. IPR004088
SMART 64 137 74 SM00322 none K homology RNA-binding domain IPR004087
SMART 159 231 73 SM00322 none K homology RNA-binding domain IPR004087
ProSiteProfiles 65 132 68 PS50084 none Type-1 KH domain profile. IPR004088
Pfam 163 198 36 PF00013 none KH domain IPR004088
Pfam 68 120 53 PF00013 none KH domain IPR004088
PANTHER 38 198 161 PTHR10288 none none none
SUPERFAMILY 158 200 43 SSF54791 none none IPR004088
PANTHER 38 198 161 PTHR10288:SF132 none none none

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting