Protein : Qrob_P0077910.2 Q. robur
Protein Identifier  ? Qrob_P0077910.2 Organism . Name  Quercus robur
Score  77.2 Score Type  egn
Protein Description  (M=2) K12193 - charged multivesicular body protein 3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 320  
Kegg Orthology  K12193
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0007034 vacuolar transport The directed movement of substances into, out of or within a vacuole.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10032656mg 1 319 + 319 Gaps:2 100.00 229 85.59 3e-63 hypothetical protein
blastp_kegg lcl|cit:102616042 1 319 + 319 Gaps:2 100.00 229 85.59 3e-63 vacuolar protein sorting-associated protein 24 homolog 1-like
blastp_kegg lcl|tcc:TCM_043307 1 319 + 319 Gaps:2 100.00 229 88.21 3e-63 Vacuolar protein sorting-associated protein 24
blastp_kegg lcl|cit:102631294 1 319 + 319 Gaps:2 100.00 229 81.66 3e-61 vacuolar protein sorting-associated protein 24 homolog 1-like
blastp_kegg lcl|cic:CICLE_v10029212mg 1 319 + 319 Gaps:2 100.00 229 80.79 6e-61 hypothetical protein
blastp_kegg lcl|vvi:100260253 1 319 + 319 Gaps:3 100.00 228 84.65 3e-60 vacuolar protein sorting-associated protein 24 homolog 1-like
blastp_kegg lcl|eus:EUTSA_v10014580mg 1 319 + 319 Gaps:2 100.00 229 80.35 1e-59 hypothetical protein
blastp_kegg lcl|aly:ARALYDRAFT_489150 1 319 + 319 Gaps:2 100.00 229 80.35 2e-59 SNF7 family protein
blastp_kegg lcl|gmx:100781929 1 319 + 319 Gaps:4 100.00 227 84.14 2e-59 vacuolar protein sorting-associated protein 24 homolog 1-like
blastp_kegg lcl|gmx:100797244 1 319 + 319 Gaps:4 100.00 227 84.14 7e-59 vacuolar protein sorting-associated protein 24 homolog 1-like
blastp_pdb 3frt_B 14 276 + 263 Gaps:2 77.52 218 43.79 3e-13 mol:protein length:218 Charged multivesicular body protein 3
blastp_pdb 3frt_A 14 276 + 263 Gaps:2 77.52 218 43.79 3e-13 mol:protein length:218 Charged multivesicular body protein 3
blastp_pdb 2gd5_D 14 273 + 260 Gaps:2 92.74 179 43.98 4e-13 mol:protein length:179 Charged multivesicular body protein 3
blastp_pdb 2gd5_C 14 273 + 260 Gaps:2 92.74 179 43.98 4e-13 mol:protein length:179 Charged multivesicular body protein 3
blastp_pdb 2gd5_B 14 273 + 260 Gaps:2 92.74 179 43.98 4e-13 mol:protein length:179 Charged multivesicular body protein 3
blastp_pdb 2gd5_A 14 273 + 260 Gaps:2 92.74 179 43.98 4e-13 mol:protein length:179 Charged multivesicular body protein 3
blastp_pdb 3frv_A 14 242 + 229 Gaps:2 88.82 152 45.19 3e-12 mol:protein length:152 Charged multivesicular body protein 3
blastp_uniprot_sprot sp|Q9FFB3|VP241_ARATH 1 319 + 319 Gaps:2 100.00 229 79.91 1e-59 Vacuolar protein sorting-associated protein 24 homolog 1 OS Arabidopsis thaliana GN VPS24-1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LXH5|VP242_ARATH 25 319 + 295 Gaps:10 99.00 200 72.22 1e-50 Putative vacuolar protein sorting-associated protein 24 homolog 2 OS Arabidopsis thaliana GN VPS24-2 PE 2 SV 1
blastp_uniprot_sprot sp|Q6NRM7|CHMP3_XENLA 14 284 + 271 Gaps:5 79.09 220 44.83 1e-16 Charged multivesicular body protein 3 OS Xenopus laevis GN chmp3 PE 2 SV 3
blastp_uniprot_sprot sp|Q5BKM3|CHMP3_XENTR 14 284 + 271 Gaps:5 79.09 220 44.83 2e-16 Charged multivesicular body protein 3 OS Xenopus tropicalis GN chmp3 PE 2 SV 4
blastp_uniprot_sprot sp|Q54P63|CHMP3_DICDI 6 312 + 307 Gaps:21 97.58 207 44.55 3e-15 Charged multivesicular body protein 3 OS Dictyostelium discoideum GN chmp3 PE 3 SV 1
blastp_uniprot_sprot sp|Q5RAU5|CHMP3_PONAB 14 284 + 271 Gaps:5 78.38 222 45.40 1e-12 Charged multivesicular body protein 3 OS Pongo abelii GN CHMP3 PE 2 SV 3
blastp_uniprot_sprot sp|Q9Y3E7|CHMP3_HUMAN 14 276 + 263 Gaps:2 76.13 222 43.79 1e-12 Charged multivesicular body protein 3 OS Homo sapiens GN CHMP3 PE 1 SV 3
blastp_uniprot_sprot sp|Q8CGS4|CHMP3_RAT 14 284 + 271 Gaps:5 78.03 223 44.83 1e-12 Charged multivesicular body protein 3 OS Rattus norvegicus GN Chmp3 PE 1 SV 3
blastp_uniprot_sprot sp|Q9CQ10|CHMP3_MOUSE 14 284 + 271 Gaps:5 77.68 224 44.83 1e-12 Charged multivesicular body protein 3 OS Mus musculus GN Chmp3 PE 1 SV 3
blastp_uniprot_sprot sp|Q58CS7|CHMP3_BOVIN 14 284 + 271 Gaps:5 78.38 222 44.83 1e-12 Charged multivesicular body protein 3 OS Bos taurus GN CHMP3 PE 2 SV 4
rpsblast_cdd gnl|CDD|146145 21 276 + 256 Gaps:4 92.90 169 29.30 7e-13 pfam03357 Snf7 Snf7. This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins such as activated cell surface receptors to the lumen of the vacuole/lysosome either for degradation/downregulation or in the case of hydrolases for proper localisation requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family.
rpsblast_kog gnl|CDD|38439 9 319 + 311 Gaps:2 97.36 227 55.20 2e-37 KOG3229 KOG3229 KOG3229 Vacuolar sorting protein VPS24 [Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|38440 7 318 + 312 Gaps:4 89.73 224 32.34 1e-11 KOG3230 KOG3230 KOG3230 Vacuolar assembly/sorting protein DID4 [Intracellular trafficking secretion and vesicular transport].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 91 91 PTHR10476:SF1 none none none
PANTHER 184 319 136 PTHR10476:SF1 none none none
Coils 22 43 22 Coil none none none
PANTHER 184 319 136 PTHR10476 none none none
Coils 293 314 22 Coil none none none
PANTHER 1 91 91 PTHR10476 none none none
Pfam 21 91 71 PF03357 none Snf7 IPR005024
Pfam 191 279 89 PF03357 none Snf7 IPR005024

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting