Protein : Qrob_P0076360.2 Q. robur
Protein Identifier  ? Qrob_P0076360.2 Organism . Name  Quercus robur
Protein Description  (M=20) PF01357//PF03330 - Pollen allergen // Rare lipoprotein A (RlpA)-like double-psi beta-barrel Alias (in v1)  Qrob_P1039200.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 242  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005576 extracellular region The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO:0009664 plant-type cell wall organization A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100244103 1 240 + 240 none 100.00 240 85.42 4e-153 expansin-A1-like
blastp_kegg lcl|pop:POPTR_0017s12150g 1 241 + 241 Gaps:8 100.00 249 84.74 1e-152 POPTRDRAFT_778530 expansin S1 precursor family protein
blastp_kegg lcl|pop:POPTR_0004s12200g 13 241 + 229 none 95.02 241 89.52 2e-152 POPTRDRAFT_556331 expansin S1 precursor family protein
blastp_kegg lcl|rcu:RCOM_0299840 13 241 + 229 none 95.02 241 89.08 5e-152 Alpha-expansin 5 precursor putative
blastp_kegg lcl|pmum:103330022 1 241 + 241 none 100.00 241 85.89 1e-151 expansin-A15
blastp_kegg lcl|pper:PRUPE_ppa010654mg 1 241 + 241 none 100.00 241 85.48 6e-151 hypothetical protein
blastp_kegg lcl|fve:101312850 2 241 + 240 Gaps:1 99.18 243 85.48 3e-149 expansin-A15-like
blastp_kegg lcl|cic:CICLE_v10012611mg 1 241 + 241 Gaps:1 100.00 240 84.58 4e-149 hypothetical protein
blastp_kegg lcl|cit:102618439 1 241 + 241 Gaps:1 100.00 240 84.17 5e-148 expansin-A5-like
blastp_kegg lcl|gmx:100799370 1 241 + 241 Gaps:2 97.20 250 82.72 4e-147 expansin-A15-like
blastp_pdb 2hcz_X 17 235 + 219 Gaps:27 93.88 245 30.87 4e-24 mol:protein length:245 Beta-expansin 1a
blastp_pdb 1n10_B 15 237 + 223 Gaps:28 95.85 241 30.74 2e-21 mol:protein length:241 Pollen allergen Phl p 1
blastp_pdb 1n10_A 15 237 + 223 Gaps:28 95.85 241 30.74 2e-21 mol:protein length:241 Pollen allergen Phl p 1
blastp_uniprot_sprot sp|O80622|EXP15_ARATH 1 240 + 240 Gaps:8 98.02 253 77.42 1e-138 Expansin-A15 OS Arabidopsis thaliana GN EXPA15 PE 2 SV 2
blastp_uniprot_sprot sp|Q9C554|EXPA1_ARATH 1 240 + 240 Gaps:10 100.00 250 76.80 5e-137 Expansin-A1 OS Arabidopsis thaliana GN EXPA1 PE 2 SV 1
blastp_uniprot_sprot sp|Q38864|EXPA5_ARATH 25 241 + 217 Gaps:1 85.49 255 83.49 1e-135 Expansin-A5 OS Arabidopsis thaliana GN EXPA5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LDR9|EXP10_ARATH 1 240 + 240 Gaps:9 100.00 249 76.71 3e-133 Expansin-A10 OS Arabidopsis thaliana GN EXPA10 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FMA0|EXP14_ARATH 1 240 + 240 Gaps:12 98.82 255 69.84 1e-126 Expansin-A14 OS Arabidopsis thaliana GN EXPA14 PE 2 SV 1
blastp_uniprot_sprot sp|O22874|EXPA8_ARATH 6 239 + 234 Gaps:11 96.84 253 67.76 1e-119 Expansin-A8 OS Arabidopsis thaliana GN EXPA8 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DHB7|EXPA4_ORYSJ 1 239 + 239 Gaps:9 100.00 246 67.89 2e-118 Expansin-A4 OS Oryza sativa subsp. japonica GN EXPA4 PE 2 SV 1
blastp_uniprot_sprot sp|A2Y5R6|EXPA4_ORYSI 1 239 + 239 Gaps:9 100.00 246 67.89 2e-118 Expansin-A4 OS Oryza sativa subsp. indica GN EXPA4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LZ99|EXPA9_ARATH 23 240 + 218 Gaps:10 88.37 258 70.61 8e-118 Expansin-A9 OS Arabidopsis thaliana GN EXPA9 PE 2 SV 1
blastp_uniprot_sprot sp|O48818|EXPA4_ARATH 23 240 + 218 Gaps:10 88.72 257 70.18 4e-116 Expansin-A4 OS Arabidopsis thaliana GN EXPA4 PE 1 SV 1
rpsblast_cdd gnl|CDD|165628 1 239 + 239 Gaps:8 100.00 247 73.68 1e-106 PLN00050 PLN00050 expansin A Provisional.
rpsblast_cdd gnl|CDD|177787 24 238 + 215 Gaps:11 88.28 256 61.50 2e-86 PLN00193 PLN00193 expansin-A Provisional.
rpsblast_cdd gnl|CDD|129070 60 137 + 78 Gaps:9 100.00 87 67.82 2e-36 smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
rpsblast_cdd gnl|CDD|201746 148 225 + 78 Gaps:4 100.00 82 56.10 1e-27 pfam01357 Pollen_allerg_1 Pollen allergen. This family contains allergens lol PI PII and PIII from Lolium perenne.
rpsblast_cdd gnl|CDD|202595 60 137 + 78 Gaps:9 100.00 77 45.45 7e-23 pfam03330 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
rpsblast_cdd gnl|CDD|178594 25 234 + 210 Gaps:22 87.45 247 31.48 2e-16 PLN03023 PLN03023 Expansin-like B1 Provisional.

31 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 24 165 142 SSF50685 none none IPR009009
Phobius 1 1 1 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
ProSiteProfiles 157 236 80 PS50843 none Expansin, Cellulose-binding-like domain profile. IPR007117
Gene3D 13 141 129 G3DSA:2.40.40.10 none none IPR014733
PRINTS 24 39 16 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 64 82 19 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 42 60 19 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 222 236 15 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 184 198 15 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 130 146 17 PR01225 none Expansin/Lol pI family signature IPR007118
Phobius 1 20 20 SIGNAL_PEPTIDE none Signal peptide region none
Gene3D 142 238 97 G3DSA:2.60.40.760 none none IPR007117
SUPERFAMILY 144 236 93 SSF49590 none none IPR007117
Phobius 13 20 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
ProSiteProfiles 43 147 105 PS50842 none Expansin, family-45 endoglucanase-like domain profile. IPR007112
PRINTS 82 93 12 PR01226 none Expansin signature IPR002963
PRINTS 105 122 18 PR01226 none Expansin signature IPR002963
PRINTS 122 135 14 PR01226 none Expansin signature IPR002963
PRINTS 193 214 22 PR01226 none Expansin signature IPR002963
PRINTS 94 104 11 PR01226 none Expansin signature IPR002963
PRINTS 222 238 17 PR01226 none Expansin signature IPR002963
PRINTS 55 69 15 PR01226 none Expansin signature IPR002963
PRINTS 146 158 13 PR01226 none Expansin signature IPR002963
PRINTS 158 179 22 PR01226 none Expansin signature IPR002963
Phobius 2 12 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 21 241 221 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 148 225 78 PF01357 none Pollen allergen IPR007117
PANTHER 1 241 241 PTHR31867 none none none
SMART 60 137 78 SM00837 none Rare lipoprotein A (RlpA)-like double-psi beta-barrel IPR007112
Pfam 60 137 78 PF03330 none Rare lipoprotein A (RlpA)-like double-psi beta-barrel IPR009009

1 Localization

Analysis Start End Length
SignalP_EUK 1 20 19

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 20   Secretory pathway 1 0.943 0.064 NON-PLANT 20