4 GO Terms
Identifier | Name | Description |
---|---|---|
GO:0020037 | heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. |
GO:0055114 | oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
GO:0004601 | peroxidase activity | Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. |
GO:0006979 | response to oxidative stress | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. |
36 Blast
Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
---|---|---|---|---|---|---|---|---|---|---|---|
blastp_kegg | lcl|pper:PRUPE_ppa007748mg | 14 | 352 | + | 339 | Gaps:6 | 94.40 | 357 | 75.67 | 8e-180 | hypothetical protein |
blastp_kegg | lcl|pmum:103336232 | 37 | 352 | + | 316 | Gaps:3 | 88.80 | 357 | 78.23 | 1e-177 | peroxidase 12 |
blastp_kegg | lcl|fve:101310766 | 14 | 352 | + | 339 | Gaps:5 | 95.21 | 355 | 73.67 | 3e-177 | peroxidase 12-like |
blastp_kegg | lcl|pop:POPTR_0002s06590g | 14 | 361 | + | 348 | Gaps:7 | 96.89 | 354 | 71.43 | 8e-174 | POPTRDRAFT_830144 peroxidase precursor family protein |
blastp_kegg | lcl|vvi:100854817 | 42 | 361 | + | 320 | Gaps:4 | 88.33 | 360 | 75.47 | 1e-173 | peroxidase 12-like |
blastp_kegg | lcl|mdm:103422058 | 36 | 352 | + | 317 | Gaps:3 | 91.12 | 349 | 75.79 | 4e-171 | peroxidase 12-like |
blastp_kegg | lcl|pxb:103929067 | 36 | 352 | + | 317 | Gaps:3 | 90.86 | 350 | 74.53 | 4e-169 | peroxidase 12-like |
blastp_kegg | lcl|pxb:103942300 | 36 | 352 | + | 317 | Gaps:3 | 90.86 | 350 | 74.53 | 6e-169 | peroxidase 12-like |
blastp_kegg | lcl|tcc:TCM_035691 | 14 | 342 | + | 329 | Gaps:5 | 91.83 | 355 | 72.09 | 1e-168 | Peroxidase |
blastp_kegg | lcl|pop:POPTR_0005s21750g | 1 | 361 | + | 361 | Gaps:11 | 99.72 | 353 | 71.59 | 5e-166 | POPTRDRAFT_714789 peroxidase precursor family protein |
blastp_pdb | 1bgp_A | 36 | 339 | + | 304 | Gaps:3 | 98.71 | 309 | 60.33 | 8e-126 | mol:protein length:309 BARLEY GRAIN PEROXIDASE |
blastp_pdb | 3hdl_A | 44 | 340 | + | 297 | Gaps:16 | 99.67 | 304 | 46.53 | 3e-82 | mol:protein length:304 Royal Palm Tree Peroxidase |
blastp_pdb | 1qo4_A | 44 | 335 | + | 292 | Gaps:12 | 97.39 | 306 | 43.62 | 1e-79 | mol:protein length:306 PEROXIDASE |
blastp_pdb | 1pa2_A | 44 | 335 | + | 292 | Gaps:12 | 97.39 | 306 | 43.62 | 1e-79 | mol:protein length:306 PEROXIDASE |
blastp_pdb | 1qgj_B | 44 | 340 | + | 297 | Gaps:20 | 99.67 | 300 | 44.48 | 1e-76 | mol:protein length:300 PEROXIDASE N |
blastp_pdb | 1qgj_A | 44 | 340 | + | 297 | Gaps:20 | 99.67 | 300 | 44.48 | 1e-76 | mol:protein length:300 PEROXIDASE N |
blastp_pdb | 1sch_B | 44 | 339 | + | 296 | Gaps:13 | 99.66 | 294 | 44.71 | 3e-75 | mol:protein length:294 PEANUT PEROXIDASE MAJOR CATIONIC ISOZYME |
blastp_pdb | 1sch_A | 44 | 339 | + | 296 | Gaps:13 | 99.66 | 294 | 44.71 | 3e-75 | mol:protein length:294 PEANUT PEROXIDASE MAJOR CATIONIC ISOZYME |
blastp_pdb | 1gx2_B | 44 | 341 | + | 298 | Gaps:22 | 99.03 | 309 | 42.48 | 1e-74 | mol:protein length:309 PEROXIDASE C1A |
blastp_pdb | 1gx2_A | 44 | 341 | + | 298 | Gaps:22 | 99.03 | 309 | 42.48 | 1e-74 | mol:protein length:309 PEROXIDASE C1A |
blastp_uniprot_sprot | sp|Q96520|PER12_ARATH | 13 | 354 | + | 342 | Gaps:5 | 95.25 | 358 | 61.58 | 6e-154 | Peroxidase 12 OS Arabidopsis thaliana GN PER12 PE 1 SV 1 |
blastp_uniprot_sprot | sp|P84516|PER1_SORBI | 21 | 354 | + | 334 | Gaps:7 | 93.65 | 362 | 56.93 | 2e-132 | Cationic peroxidase SPC4 OS Sorghum bicolor GN Sb03g046810 PE 1 SV 2 |
blastp_uniprot_sprot | sp|Q9SI16|PER15_ARATH | 9 | 335 | + | 327 | Gaps:20 | 96.75 | 338 | 45.87 | 7e-87 | Peroxidase 15 OS Arabidopsis thaliana GN PER15 PE 2 SV 1 |
blastp_uniprot_sprot | sp|Q9FJZ9|PER72_ARATH | 48 | 339 | + | 292 | Gaps:11 | 88.39 | 336 | 47.81 | 5e-86 | Peroxidase 72 OS Arabidopsis thaliana GN PER72 PE 1 SV 1 |
blastp_uniprot_sprot | sp|Q9SI17|PER14_ARATH | 48 | 335 | + | 288 | Gaps:13 | 86.94 | 337 | 48.46 | 2e-85 | Peroxidase 14 OS Arabidopsis thaliana GN PER14 PE 3 SV 1 |
blastp_uniprot_sprot | sp|O23237|PER49_ARATH | 47 | 340 | + | 294 | Gaps:11 | 90.33 | 331 | 46.49 | 5e-85 | Peroxidase 49 OS Arabidopsis thaliana GN PER49 PE 2 SV 2 |
blastp_uniprot_sprot | sp|Q9SD46|PER36_ARATH | 44 | 341 | + | 298 | Gaps:11 | 88.08 | 344 | 46.20 | 3e-81 | Peroxidase 36 OS Arabidopsis thaliana GN PER36 PE 2 SV 2 |
blastp_uniprot_sprot | sp|Q9FG34|PER54_ARATH | 1 | 339 | + | 339 | Gaps:23 | 93.30 | 358 | 42.51 | 4e-81 | Peroxidase 54 OS Arabidopsis thaliana GN PER54 PE 2 SV 1 |
blastp_uniprot_sprot | sp|P80679|PERA2_ARMRU | 44 | 335 | + | 292 | Gaps:12 | 97.70 | 305 | 43.96 | 3e-80 | Peroxidase A2 OS Armoracia rusticana GN HRPA2 PE 1 SV 1 |
blastp_uniprot_sprot | sp|Q96512|PER9_ARATH | 34 | 339 | + | 306 | Gaps:16 | 91.33 | 346 | 43.67 | 9e-80 | Peroxidase 9 OS Arabidopsis thaliana GN PER9 PE 1 SV 1 |
28 Domain Motifs
Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
---|---|---|---|---|---|---|---|
Gene3D | 45 | 214 | 170 | G3DSA:1.10.520.10 | none | none | none |
PRINTS | 156 | 168 | 13 | PR00458 | none | Haem peroxidase superfamily signature | IPR002016 |
PRINTS | 138 | 155 | 18 | PR00458 | none | Haem peroxidase superfamily signature | IPR002016 |
PRINTS | 259 | 274 | 16 | PR00458 | none | Haem peroxidase superfamily signature | IPR002016 |
PRINTS | 206 | 221 | 16 | PR00458 | none | Haem peroxidase superfamily signature | IPR002016 |
PRINTS | 75 | 89 | 15 | PR00458 | none | Haem peroxidase superfamily signature | IPR002016 |
Phobius | 1 | 29 | 29 | SIGNAL_PEPTIDE | none | Signal peptide region | none |
Gene3D | 215 | 336 | 122 | G3DSA:1.10.420.10 | none | none | none |
PANTHER | 12 | 341 | 330 | PTHR31235 | none | none | none |
Phobius | 12 | 23 | 12 | SIGNAL_PEPTIDE_H_REGION | none | Hydrophobic region of a signal peptide. | none |
PANTHER | 12 | 341 | 330 | PTHR31235:SF12 | none | none | none |
Phobius | 24 | 29 | 6 | SIGNAL_PEPTIDE_C_REGION | none | C-terminal region of a signal peptide. | none |
PRINTS | 77 | 97 | 21 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 273 | 290 | 18 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 205 | 217 | 13 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 53 | 72 | 20 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 137 | 147 | 11 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 156 | 171 | 16 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 313 | 326 | 14 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 118 | 131 | 14 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 257 | 272 | 16 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
Pfam | 60 | 301 | 242 | PF00141 | none | Peroxidase | IPR002016 |
ProSitePatterns | 75 | 86 | 12 | PS00436 | none | Peroxidases active site signature. | IPR019794 |
Phobius | 1 | 11 | 11 | SIGNAL_PEPTIDE_N_REGION | none | N-terminal region of a signal peptide. | none |
ProSiteProfiles | 43 | 339 | 297 | PS50873 | none | Plant heme peroxidase family profile. | IPR002016 |
Phobius | 30 | 361 | 332 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
ProSitePatterns | 206 | 216 | 11 | PS00435 | none | Peroxidases proximal heme-ligand signature. | IPR019793 |
SUPERFAMILY | 44 | 339 | 296 | SSF48113 | none | none | IPR010255 |
3 Localization
Analysis | Start | End | Length |
---|---|---|---|
TMHMM | 7 | 29 | 22 |
SignalP_GRAM_POSITIVE | 1 | 29 | 28 |
SignalP_EUK | 1 | 29 | 28 |
15 Qtllist
Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
---|---|---|---|---|---|---|---|---|---|---|
Bourran1_2003_QTL2_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1B0H8U_259 | s_1CB1VL_554 | 17 | 0 | 87 | lod | 3,3 | 8,7 |
Bourran2_2004_QTL9_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1C34E9_788 | v_12238_322 | 50 | 25 | 75 | lod | 4,4 | 10,1 |
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf | Qrob_Chr02 | 2 | s_1AQA4Z_1644 | s_1AK5QX_947 | 53.67 | 14,01 | 79,68 | lod | 5.6594 | 0.03 |
Bourran1_2004_QTL2_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1AW12F_382 | s_1A77MR_223 | 42 | 6 | 64 | lod | 3,6 | 9,6 |
Bourran_2000_2002_QTL2_Delta.F | Qrob_Chr02 | 2 | s_1CSO13_1244 | s_1AVEUF_1540 | 55.44 | 46,71 | 63,68 | lod | 7.3232 | 0.058 |
Bourran2_2002_QTL7_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1ANG6_1446 | v_11270_161 | 40 | 29 | 52 | lod | 8,1 | 16 |
Bourran2_2002_QTL9_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1BFNDA_375 | s_1A3VA1_2139 | 32,5 | 17 | 62 | lod | 3,1 | 4,2 |
Bourran2_2003_QTL8_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1ANG6_1446 | v_11270_161 | 40 | 0 | 72 | lod | 4,4 | 9,9 |
Bourran2_2014_nP_A4 | Qrob_Chr11 | 11 | s_1B58GB_1413 | s_1A5BYY_1671 | 11,15 | 0 | 42,38 | lod | 1,8913 | 4,5 |
Bourran2_2015_nP_A4 | Qrob_Chr02 | 2 | s_1A0FUE_1868 | s_1A1UAI_500 | 20,64 | 20,47 | 21,36 | lod | 5.8 | 10.9 |
Bourran2_2015_nPriLBD_A4 | Qrob_Chr02 | 2 | s_1CP5DI_1183 | s_1A63ZX_1277 | 24,87 | 24,63 | 26,18 | lod | 3.8 | 7 |
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf | Qrob_Chr02 | 2 | s_1AEP21_172 | v_6048_204 | 46.33 | 22,5 | 65,23 | lod | 4.972 | 0.03 |
Bourran2_2015_nEpis_A4 | Qrob_Chr09 | 9 | v_15847_485 | v_8329_369 | 34,94 | 34,88 | 37,45 | lod | 3.1 | 7 |
Bourran1_2004_QTL3_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1B0H8U_259 | s_1CB1VL_554 | 17 | 0 | 46 | lod | 2,9 | 6,4 |
Bourran2_2015_nEpiBC_A4 | Qrob_Chr07 | 7 | s_1DP9TW_798 | v_8128_173 | 22,61 | 22,14 | 22,73 | lod | 3.1 | 8.5 |