Protein : Qrob_P0075800.2 Q. robur
Protein Identifier  ? Qrob_P0075800.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K17675 - ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:3.6.4.13] Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 813  
Kegg Orthology  K17675
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0016817 hydrolase activity, acting on acid anhydrides Catalysis of the hydrolysis of any acid anhydride.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103329996 2 812 + 811 Gaps:22 97.08 823 77.60 0.0 ATP-dependent RNA helicase SUPV3L1 mitochondrial
blastp_kegg lcl|pper:PRUPE_ppa001533mg 2 812 + 811 Gaps:22 99.13 806 77.35 0.0 hypothetical protein
blastp_kegg lcl|pxb:103933076 2 812 + 811 Gaps:23 97.09 824 76.00 0.0 ATP-dependent RNA helicase SUPV3L1 mitochondrial
blastp_kegg lcl|mdm:103404437 2 812 + 811 Gaps:30 97.08 821 76.16 0.0 ATP-dependent RNA helicase SUPV3L1 mitochondrial
blastp_kegg lcl|fve:101294582 2 812 + 811 Gaps:24 97.40 808 76.87 0.0 ATP-dependent RNA helicase SUPV3L1 mitochondrial-like
blastp_kegg lcl|tcc:TCM_018504 3 812 + 810 Gaps:57 98.24 852 72.64 0.0 ATP-dependent RNA helicase SUPV3L1 isoform 1
blastp_kegg lcl|vvi:100853943 45 812 + 768 Gaps:30 92.31 806 79.03 0.0 ATP-dependent RNA helicase SUPV3L1 mitochondrial-like
blastp_kegg lcl|cic:CICLE_v10011090mg 3 811 + 809 Gaps:32 96.68 814 76.62 0.0 hypothetical protein
blastp_kegg lcl|cit:102629021 3 811 + 809 Gaps:37 96.66 809 76.60 0.0 ATP-dependent RNA helicase SUPV3L1 mitochondrial-like
blastp_kegg lcl|fve:101296048 3 812 + 810 Gaps:36 96.88 801 75.90 0.0 ATP-dependent RNA helicase SUPV3L1 mitochondrial-like
blastp_pdb 3rc8_A 195 756 + 562 Gaps:40 84.79 677 42.68 4e-140 mol:protein length:677 ATP-dependent RNA helicase SUPV3L1 mitochond
blastp_pdb 3rc3_A 195 756 + 562 Gaps:40 84.79 677 42.68 4e-140 mol:protein length:677 ATP-dependent RNA helicase SUPV3L1 mitochond
blastp_uniprot_sprot sp|Q8IYB8|SUV3_HUMAN 195 756 + 562 Gaps:40 73.03 786 42.68 2e-138 ATP-dependent RNA helicase SUPV3L1 mitochondrial OS Homo sapiens GN SUPV3L1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5EBA1|SUV3_RAT 195 750 + 556 Gaps:31 73.32 776 41.65 4e-136 ATP-dependent RNA helicase SUPV3L1 mitochondrial OS Rattus norvegicus GN Supv3l1 PE 2 SV 1
blastp_uniprot_sprot sp|Q80YD1|SUV3_MOUSE 195 750 + 556 Gaps:31 73.04 779 41.30 9e-134 ATP-dependent RNA helicase SUPV3L1 mitochondrial OS Mus musculus GN Supv3l1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5ZJT0|SUV3_CHICK 236 756 + 521 Gaps:31 67.00 794 43.05 5e-130 ATP-dependent RNA helicase SUPV3L1 mitochondrial OS Gallus gallus GN SUPV3L1 PE 2 SV 1
blastp_uniprot_sprot sp|A4IG62|SUV3_DANRE 199 756 + 558 Gaps:34 74.71 763 40.70 1e-128 ATP-dependent RNA helicase SUPV3L1 mitochondrial OS Danio rerio GN supv3l1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9VN03|SUV3_DROME 273 790 + 518 Gaps:35 69.59 763 42.18 1e-124 ATP-dependent RNA helicase SUV3 homolog mitochondrial OS Drosophila melanogaster GN CG9791 PE 2 SV 3
blastp_uniprot_sprot sp|Q61SU7|SUV3_CAEBR 271 750 + 480 Gaps:17 66.71 721 42.83 1e-120 ATP-dependent RNA helicase SUV3 homolog mitochondrial OS Caenorhabditis briggsae GN CBG06022 PE 3 SV 3
blastp_uniprot_sprot sp|Q295E6|SUV3_DROPS 273 790 + 518 Gaps:40 69.03 762 41.44 5e-120 ATP-dependent RNA helicase SUV3 homolog mitochondrial OS Drosophila pseudoobscura pseudoobscura GN GA22038 PE 3 SV 1
blastp_uniprot_sprot sp|Q17828|SUV3_CAEEL 261 750 + 490 Gaps:19 67.82 721 41.51 7e-119 ATP-dependent RNA helicase SUV3 homolog mitochondrial OS Caenorhabditis elegans GN C08F8.2 PE 3 SV 2
blastp_uniprot_sprot sp|O94445|SUV3_SCHPO 299 747 + 449 Gaps:24 71.25 647 39.70 2e-107 ATP-dependent RNA helicase suv3 mitochondrial OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN suv3 PE 3 SV 1
rpsblast_cdd gnl|CDD|197757 503 584 + 82 Gaps:12 87.80 82 36.11 5e-12 smart00490 HELICc helicase superfamily c-terminal domain.
rpsblast_cdd gnl|CDD|31397 322 605 + 284 Gaps:90 47.52 766 23.35 6e-11 COG1204 COG1204 Superfamily II helicase [General function prediction only].
rpsblast_cdd gnl|CDD|201125 503 584 + 82 Gaps:12 92.31 78 34.72 1e-10 pfam00271 Helicase_C Helicase conserved C-terminal domain. The Prosite family is restricted to DEAD/H helicases whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit but an integral part of the helicase.
rpsblast_cdd gnl|CDD|30859 315 585 + 271 Gaps:31 47.17 513 21.90 1e-10 COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication recombination and repair / Transcription / Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|28960 483 586 + 104 Gaps:13 70.99 131 31.18 8e-10 cd00079 HELICc Helicase superfamily c-terminal domain associated with DEXDc- DEAD- and DEAH-box proteins yeast initiation factor 4A Ski2p and Hepatitis C virus NS3 helicases this domain is found in a wide variety of helicases and helicase related proteins may not be an autonomously folding unit but an integral part of the helicase 4 helicase superfamilies at present according to the organization of their signature motifs all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA unwinding the duplex in the process.
rpsblast_cdd gnl|CDD|204947 730 778 + 49 Gaps:1 97.96 49 33.33 2e-08 pfam12513 SUV3_C Mitochondrial degradasome RNA helicase subunit C terminal. This domain family is found in bacteria and eukaryotes and is approximately 50 amino acids in length. The family is found in association with pfam00271. The yeast mitochondrial degradosome (mtEXO) is an NTP-dependent exoribonuclease involved in mitochondrial RNA metabolism. mtEXO is made up of two subunits: an RNase (DSS1) and an RNA helicase (SUV3). These co-purify with mitochondrial ribosomes.
rpsblast_cdd gnl|CDD|34219 528 584 + 57 none 5.48 1041 36.84 5e-08 COG4581 COG4581 Superfamily II RNA helicase [DNA replication recombination and repair].
rpsblast_kog gnl|CDD|36171 185 809 + 625 Gaps:32 87.57 700 48.29 0.0 KOG0953 KOG0953 KOG0953 Mitochondrial RNA helicase SUV3 DEAD-box superfamily [RNA processing and modification].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 492 584 93 SM00490 none helicase superfamily c-terminal domain IPR001650
Pfam 501 584 84 PF00271 none Helicase conserved C-terminal domain IPR001650
Gene3D 311 426 116 G3DSA:3.40.50.300 none none IPR027417
SUPERFAMILY 316 586 271 SSF52540 none none IPR027417
PANTHER 188 812 625 PTHR12131 none none none
PANTHER 188 812 625 PTHR12131:SF1 none none none
Gene3D 483 586 104 G3DSA:3.40.50.300 none none IPR027417
ProSiteProfiles 459 623 165 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
SMART 298 466 169 SM00487 none DEAD-like helicases superfamily IPR014001
ProSiteProfiles 310 426 117 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
Pfam 730 778 49 PF12513 none Mitochondrial degradasome RNA helicase subunit C terminal IPR022192

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 55   Mitochondrion 2 0.107 0.840 NON-PLANT 55