Protein : Qrob_P0074920.2 Q. robur
Protein Identifier  ? Qrob_P0074920.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K03246 - translation initiation factor eIF-3 subunit 2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 314  
Kegg Orthology  K03246
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0003743 translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO:0005852 eukaryotic translation initiation factor 3 complex A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101211648 1 313 + 313 Gaps:13 100.00 326 89.57 0.0 eukaryotic translation initiation factor 3 subunit I-like
blastp_kegg lcl|cmo:103486975 1 313 + 313 Gaps:13 100.00 326 89.26 0.0 eukaryotic translation initiation factor 3 subunit I-like
blastp_kegg lcl|rcu:RCOM_0776150 1 313 + 313 Gaps:13 100.00 326 88.34 0.0 eukaryotic translation initiation factor 3 subunit putative
blastp_kegg lcl|gmx:100793485 1 313 + 313 Gaps:13 100.00 326 87.42 0.0 eukaryotic translation initiation factor 3 subunit I-like
blastp_kegg lcl|pvu:PHAVU_002G070400g 1 313 + 313 Gaps:13 100.00 326 87.42 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa008567mg 1 313 + 313 Gaps:13 100.00 326 87.73 0.0 hypothetical protein
blastp_kegg lcl|pmum:103321007 1 313 + 313 Gaps:13 100.00 326 87.42 0.0 eukaryotic translation initiation factor 3 subunit I-like
blastp_kegg lcl|cit:102612031 1 313 + 313 Gaps:13 100.00 326 86.81 0.0 eukaryotic translation initiation factor 3 subunit I-like
blastp_kegg lcl|cam:101509158 1 313 + 313 Gaps:13 100.00 326 86.20 0.0 eukaryotic translation initiation factor 3 subunit I-like
blastp_kegg lcl|mdm:103403465 1 313 + 313 Gaps:13 100.00 326 86.81 0.0 eukaryotic translation initiation factor 3 subunit I-like
blastp_pdb 3zwl_D 1 312 + 312 Gaps:26 89.43 369 38.79 1e-73 mol:protein length:369 EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SU
blastp_pdb 3zwl_B 1 312 + 312 Gaps:26 89.43 369 38.79 1e-73 mol:protein length:369 EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SU
blastp_pdb 2ovr_B 3 301 + 299 Gaps:65 62.02 445 29.71 8e-16 mol:protein length:445 F-box/WD repeat protein 7
blastp_pdb 2ovq_B 3 301 + 299 Gaps:65 62.02 445 29.71 8e-16 mol:protein length:445 F-box/WD repeat protein 7
blastp_pdb 2ovp_B 3 301 + 299 Gaps:65 62.02 445 29.71 8e-16 mol:protein length:445 F-box/WD repeat protein 7
blastp_pdb 1erj_C 50 304 + 255 Gaps:66 66.67 393 37.79 2e-11 mol:protein length:393 TRANSCRIPTIONAL REPRESSOR TUP1
blastp_pdb 1erj_B 50 304 + 255 Gaps:66 66.67 393 37.79 2e-11 mol:protein length:393 TRANSCRIPTIONAL REPRESSOR TUP1
blastp_pdb 1erj_A 50 304 + 255 Gaps:66 66.67 393 37.79 2e-11 mol:protein length:393 TRANSCRIPTIONAL REPRESSOR TUP1
blastp_pdb 3shf_A 50 301 + 252 Gaps:69 33.76 1256 26.65 2e-10 mol:protein length:1256 Apoptotic peptidase activating factor 1
blastp_pdb 3sfz_A 50 301 + 252 Gaps:69 33.95 1249 26.65 2e-10 mol:protein length:1249 Apoptotic peptidase activating factor 1
blastp_uniprot_sprot sp|Q38884|EIF3I_ARATH 1 313 + 313 Gaps:15 100.00 328 77.13 1e-179 Eukaryotic translation initiation factor 3 subunit I OS Arabidopsis thaliana GN TIF3I1 PE 2 SV 2
blastp_uniprot_sprot sp|Q1HPW4|EIF3I_BOMMO 1 310 + 310 Gaps:17 97.57 329 46.42 5e-95 Eukaryotic translation initiation factor 3 subunit I OS Bombyx mori PE 2 SV 1
blastp_uniprot_sprot sp|B4Q354|EIF3I_DROSI 1 309 + 309 Gaps:16 98.47 326 45.17 5e-93 Eukaryotic translation initiation factor 3 subunit I OS Drosophila simulans GN Trip1 PE 3 SV 1
blastp_uniprot_sprot sp|B4I195|EIF3I_DROSE 1 309 + 309 Gaps:16 98.47 326 45.17 7e-93 Eukaryotic translation initiation factor 3 subunit I OS Drosophila sechellia GN Trip1 PE 3 SV 1
blastp_uniprot_sprot sp|O02195|EIF3I_DROME 1 309 + 309 Gaps:16 98.47 326 45.17 7e-93 Eukaryotic translation initiation factor 3 subunit I OS Drosophila melanogaster GN Trip1 PE 1 SV 1
blastp_uniprot_sprot sp|Q7ZV55|EIF3I_DANRE 1 313 + 313 Gaps:16 99.38 325 42.41 2e-92 Eukaryotic translation initiation factor 3 subunit I OS Danio rerio GN eif3i PE 2 SV 1
blastp_uniprot_sprot sp|B3N4C7|EIF3I_DROER 1 309 + 309 Gaps:16 98.47 326 44.86 3e-92 Eukaryotic translation initiation factor 3 subunit I OS Drosophila erecta GN Trip1 PE 3 SV 1
blastp_uniprot_sprot sp|B5FZ19|EIF3I_TAEGU 1 313 + 313 Gaps:16 99.38 325 43.34 6e-92 Eukaryotic translation initiation factor 3 subunit I OS Taeniopygia guttata GN EIF3I PE 2 SV 2
blastp_uniprot_sprot sp|Q29L19|EIF3I_DROPS 1 309 + 309 Gaps:20 98.47 326 45.79 6e-92 Eukaryotic translation initiation factor 3 subunit I OS Drosophila pseudoobscura pseudoobscura GN Trip1 PE 3 SV 2
blastp_uniprot_sprot sp|B4GSH1|EIF3I_DROPE 1 309 + 309 Gaps:20 98.47 326 45.79 6e-92 Eukaryotic translation initiation factor 3 subunit I OS Drosophila persimilis GN Trip1 PE 3 SV 1

27 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 6 303 298 G3DSA:2.130.10.10 none none IPR015943
Pfam 175 206 32 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 125 161 37 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 51 67 17 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 272 301 30 PF00400 none WD domain, G-beta repeat IPR001680
ProSiteProfiles 6 47 42 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
ProSiteProfiles 50 76 27 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSiteProfiles 271 313 43 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
Hamap 1 313 313 MF_03008 none Eukaryotic translation initiation factor 3 subunit I [EIF3I]. IPR027525
ProSiteProfiles 271 301 31 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
PRINTS 148 162 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 54 68 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 193 207 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
SUPERFAMILY 4 301 298 SSF50978 none none IPR017986
ProSiteProfiles 50 76 27 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
ProSitePatterns 148 162 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
PANTHER 1 312 312 PTHR19877 none none none
ProSiteProfiles 129 170 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSitePatterns 54 68 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
ProSiteProfiles 174 215 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSiteProfiles 6 47 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
SMART 164 206 43 SM00320 none WD40 repeats IPR001680
SMART 1 67 67 SM00320 none WD40 repeats IPR001680
SMART 209 248 40 SM00320 none WD40 repeats IPR001680
SMART 264 303 40 SM00320 none WD40 repeats IPR001680
SMART 122 161 40 SM00320 none WD40 repeats IPR001680
ProSiteProfiles 129 215 87 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting