Protein : Qrob_P0071410.2 Q. robur
Protein Identifier  ? Qrob_P0071410.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PF12530 - Protein of unknown function (DUF3730) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1836  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103330162 1 1834 + 1834 Gaps:63 99.95 1850 71.50 0.0 protein RST1
blastp_kegg lcl|pxb:103926957 1 1834 + 1834 Gaps:73 99.95 1856 68.95 0.0 protein RST1-like
blastp_kegg lcl|pxb:103965816 1 1835 + 1835 Gaps:72 100.00 1853 68.00 0.0 protein RST1-like
blastp_kegg lcl|mdm:103404304 1 1834 + 1834 Gaps:85 99.95 1852 68.45 0.0 protein RST1-like
blastp_kegg lcl|fve:101300477 1 1832 + 1832 Gaps:62 99.67 1846 67.28 0.0 uncharacterized protein LOC101300477
blastp_kegg lcl|rcu:RCOM_1063970 1 1835 + 1835 Gaps:77 100.00 1858 66.15 0.0 hypothetical protein
blastp_kegg lcl|mdm:103442217 1 1834 + 1834 Gaps:71 99.95 1854 68.65 0.0 protein RST1-like
blastp_kegg lcl|tcc:TCM_047033 1 1834 + 1834 Gaps:66 99.95 1857 67.56 0.0 ARM repeat superfamily protein putative
blastp_kegg lcl|cit:102623696 1 1834 + 1834 Gaps:75 99.95 1860 66.27 0.0 uncharacterized LOC102623696
blastp_kegg lcl|pop:POPTR_0001s35240g 1 1835 + 1835 Gaps:68 100.00 1833 67.98 0.0 POPTRDRAFT_815510 hypothetical protein
blastp_uniprot_sprot sp|Q5VW36|FOCAD_HUMAN 511 794 + 284 Gaps:42 16.99 1801 24.18 9e-08 Focadhesin OS Homo sapiens GN FOCAD PE 1 SV 1
rpsblast_cdd gnl|CDD|193064 81 742 + 662 Gaps:62 100.00 230 54.78 3e-49 pfam12530 DUF3730 Protein of unknown function (DUF3730). This domain family is found in eukaryotes and is typically between 220 and 262 amino acids in length.

24 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 561 1835 1275 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 490 508 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 439 491 53 PTHR16212:SF4 none none none
Phobius 527 537 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 515 1718 1204 PTHR16212 none none none
PANTHER 7 422 416 PTHR16212 none none none
SUPERFAMILY 7 240 234 SSF48371 none none IPR016024
Phobius 509 526 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 1140 1303 164 SSF48371 none none IPR016024
SUPERFAMILY 869 1110 242 SSF48371 none none IPR016024
SUPERFAMILY 634 752 119 SSF48371 none none IPR016024
SUPERFAMILY 1334 1374 41 SSF48371 none none IPR016024
Pfam 82 339 258 PF12530 none Protein of unknown function (DUF3730) IPR022542
Pfam 514 742 229 PF12530 none Protein of unknown function (DUF3730) IPR022542
PANTHER 439 491 53 PTHR16212 none none none
Phobius 1 468 468 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 469 489 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 16 71 56 G3DSA:1.25.10.10 none none IPR011989
Gene3D 507 682 176 G3DSA:1.25.10.10 none none IPR011989
Gene3D 1344 1374 31 G3DSA:1.25.10.10 none none IPR011989
Gene3D 910 1046 137 G3DSA:1.25.10.10 none none IPR011989
PANTHER 515 1718 1204 PTHR16212:SF4 none none none
PANTHER 7 422 416 PTHR16212:SF4 none none none
Phobius 538 560 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

0 Targeting