Protein : Qrob_P0071310.2 Q. robur
Protein Identifier  ? Qrob_P0071310.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) PTHR23344:SF5 - GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE LIKE 6-RELATED (PTHR23344:SF5) Code Enzyme  EC:3.1.4.46
Gene Prediction Quality  validated Protein length 

Sequence

Length: 752  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0006629 lipid metabolic process The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
GO:0008081 phosphoric diester hydrolase activity Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group.
GO:0006071 glycerol metabolic process The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.
GO:0008889 glycerophosphodiester phosphodiesterase activity Catalysis of the reaction: a glycerophosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_037090 34 748 + 715 Gaps:10 94.83 754 64.62 0.0 SHV3-like 5
blastp_kegg lcl|pop:POPTR_0018s11890g 8 750 + 743 Gaps:9 99.07 751 60.62 0.0 POPTRDRAFT_912645 hypothetical protein
blastp_kegg lcl|aly:ARALYDRAFT_918993 32 747 + 716 Gaps:6 95.23 754 61.14 0.0 glycerophosphoryl diester phosphodiesterase family protein
blastp_kegg lcl|pop:POPTR_0006s20170g 15 750 + 736 Gaps:27 98.36 731 62.45 0.0 POPTRDRAFT_867601 hypothetical protein
blastp_kegg lcl|aly:ARALYDRAFT_919005 32 749 + 718 Gaps:6 95.49 754 60.42 0.0 glycerophosphoryl diester phosphodiesterase family protein
blastp_kegg lcl|crb:CARUB_v10028327mg 32 747 + 716 Gaps:6 95.48 752 60.31 0.0 hypothetical protein
blastp_kegg lcl|brp:103851665 32 747 + 716 Gaps:9 95.47 751 60.81 0.0 probable glycerophosphoryl diester phosphodiesterase 3
blastp_kegg lcl|eus:EUTSA_v10012762mg 32 729 + 698 Gaps:7 93.09 753 60.34 0.0 hypothetical protein
blastp_kegg lcl|pmum:103341241 32 748 + 717 Gaps:27 94.37 782 59.62 0.0 probable glycerophosphoryl diester phosphodiesterase 2
blastp_kegg lcl|ath:AT5G58170 32 746 + 715 Gaps:4 95.60 750 58.86 0.0 SVL5 glycerophosphodiester phosphodiesterase like 7
blastp_uniprot_sprot sp|Q9SZ11|GLPQ2_ARATH 34 750 + 717 Gaps:12 94.73 759 45.06 0.0 Probable glycerophosphoryl diester phosphodiesterase 2 OS Arabidopsis thaliana GN GPDL2 PE 1 SV 3
blastp_uniprot_sprot sp|Q7Y208|GLPQ3_ARATH 34 725 + 692 Gaps:11 91.87 763 46.22 0.0 Probable glycerophosphoryl diester phosphodiesterase 3 OS Arabidopsis thaliana GN GPDL3 PE 1 SV 2
blastp_uniprot_sprot sp|Q9FJ62|GLPQ1_ARATH 34 747 + 714 Gaps:12 93.99 766 44.72 0.0 Probable glycerophosphoryl diester phosphodiesterase 1 OS Arabidopsis thaliana GN GPDL1 PE 1 SV 1
rpsblast_cdd gnl|CDD|176546 39 650 + 612 Gaps:46 100.00 300 64.33 1e-126 cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs) which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both SHV3 and SVLs have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition the two tandem repeats show low sequence similarity to each other suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date SHV3 orthologues are only found in Physcomitrella patens. This CD includes domain II (the second GDPD domain of SHV3 and SVLs) which is necessary for SHV3 function.
rpsblast_cdd gnl|CDD|176545 39 648 + 610 Gaps:22 100.00 299 64.55 1e-116 cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs) which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both SHV3 and SVLs have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition the two tandem repeats show low sequence similarity to each other suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date SHV3 orthologues are only found in Physcomitrella patens. This family includes domain I the first GDPD domain of SHV3 and SVLs.
rpsblast_cdd gnl|CDD|176513 39 650 + 612 Gaps:36 100.00 302 72.85 1e-104 cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs) which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both SHV3 and SVLs have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition the two tandem repeats show low sequence similarity to each other suggesting they have different biochemical function. Most members of this family are Arabidopsis-specific gene products. To date SHV3 orthologues are only found in Physcomitrella patens.
rpsblast_cdd gnl|CDD|176544 39 644 + 606 Gaps:80 100.00 309 45.63 1e-33 cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs) all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome and in plants two distinct Arabidopsis thaliana genes AT5G08030 and AT1G74210 coding putative GP-PDEs from the cell walls and vacuoles respectively.
rpsblast_cdd gnl|CDD|176502 39 644 + 606 Gaps:74 100.00 296 45.61 3e-31 cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols which are major sources of carbon and phosphate. In E. coli there are two major G3P uptake systems: Glp and Ugp which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters such as glycerophosphocholine (GPC) glycerophosphoethanolanmine (GPE) glycerophosphoglycerol (GPG) glycerophosphoinositol (GPI) and glycerophosphoserine (GPS) to the corresponding alcohols and G3P which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for GlpQ enzymatic activity. This subfamily also includes some GP-GDEs in higher plants and their eukaryotic homologs which show very high sequence similarities with bacterial periplasmic GP-GDEs.
rpsblast_cdd gnl|CDD|202508 361 646 + 286 Gaps:60 99.16 238 27.12 2e-17 pfam03009 GDPD Glycerophosphoryl diester phosphodiesterase family. E. coli has two sequence related isozymes of glycerophosphoryl diester phosphodiesterase (GDPD) - periplasmic and cytosolic. This family also includes agrocinopine synthase the similarity to GDPD has been noted. This family appears to have weak but not significant matches to mammalian phospholipase C pfam00388 which suggests that this family may adopt a TIM barrel fold.
rpsblast_cdd gnl|CDD|176542 354 644 + 291 Gaps:48 99.69 318 23.97 6e-15 cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE EC 3.1.4.46) GlpQ and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters such as glycerophosphocholine (GPC) glycerophosphoethanolanmine (GPE) glycerophosphoglycerol (GPG) glycerophosphoinositol (GPI) and glycerophosphoserine (GPS) to the corresponding alcohols and G3P which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for the enzymatic activity of GlpQ. This family also includes a surface-exposed lipoprotein protein D (HPD) from Haemophilus influenza Type b and nontypeable strains which shows very high sequence similarity with E. coli GlpQ. HPD has been characterized as a human immunoglobulin D-binding protein with glycerophosphodiester phosphodiesterase activity. It can hydrolyze phosphatidylcholine from host membranes to produce free choline on the lipopolysaccharides on the surface of pathogenic bacteria.
rpsblast_cdd gnl|CDD|30929 349 647 + 299 Gaps:57 97.28 257 25.60 7e-15 COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion].
rpsblast_cdd gnl|CDD|182992 339 654 + 316 Gaps:69 96.62 355 22.45 4e-12 PRK11143 glpQ glycerophosphodiester phosphodiesterase Provisional.
rpsblast_kog gnl|CDD|37469 279 655 + 377 Gaps:48 97.65 341 40.54 1e-57 KOG2258 KOG2258 KOG2258 Glycerophosphoryl diester phosphodiesterase [Energy production and conversion].

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 75 331 257 PF03009 none Glycerophosphoryl diester phosphodiesterase family IPR030395
Pfam 361 646 286 PF03009 none Glycerophosphoryl diester phosphodiesterase family IPR030395
ProSiteProfiles 39 338 300 PS51704 none GP-PDE domain profile. IPR030395
Phobius 731 750 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 353 651 299 SSF51695 none none IPR017946
Phobius 751 751 1 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 38 337 300 SSF51695 none none IPR017946
PANTHER 118 413 296 PTHR23344:SF5 none none none
Gene3D 354 651 298 G3DSA:3.20.20.190 none none IPR017946
Gene3D 38 338 301 G3DSA:3.20.20.190 none none IPR017946
Phobius 1 730 730 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSiteProfiles 354 651 298 PS51704 none GP-PDE domain profile. IPR030395
PANTHER 430 706 277 PTHR23344:SF5 none none none
PANTHER 118 413 296 PTHR23344 none none IPR004129
PANTHER 430 706 277 PTHR23344 none none IPR004129

0 Localization

0 Qtllist

0 Targeting