Protein : Qrob_P0070790.2 Q. robur
Protein Identifier  ? Qrob_P0070790.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=5) PTHR10388//PTHR10388:SF9 - EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 451  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

16 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100244952 1 450 + 450 Gaps:3 93.51 478 72.71 0.0 APO protein 2 chloroplastic-like
blastp_kegg lcl|csv:101209221 1 450 + 450 Gaps:1 100.00 451 70.29 0.0 APO protein 2 chloroplastic-like
blastp_kegg lcl|cmo:103487348 1 450 + 450 Gaps:1 100.00 451 70.73 0.0 APO protein 2 chloroplastic
blastp_kegg lcl|pop:POPTR_0006s19750g 29 450 + 422 Gaps:6 99.52 418 74.04 0.0 POPTRDRAFT_561339 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa005668mg 1 450 + 450 Gaps:9 100.00 449 73.50 0.0 hypothetical protein
blastp_kegg lcl|pmum:103341275 1 450 + 450 Gaps:9 100.00 449 73.50 0.0 APO protein 2 chloroplastic
blastp_kegg lcl|rcu:RCOM_0623480 5 450 + 446 Gaps:6 73.05 616 69.56 0.0 APO protein 2 chloroplast precursor putative
blastp_kegg lcl|tcc:TCM_037039 1 450 + 450 Gaps:8 97.80 454 73.65 0.0 APO protein 2 chloroplast putative
blastp_kegg lcl|cam:101505267 16 450 + 435 Gaps:19 89.55 469 73.10 0.0 APO protein 2 chloroplastic-like
blastp_kegg lcl|pop:POPTR_0018s11560g 2 450 + 449 Gaps:7 97.58 455 68.92 0.0 POPTRDRAFT_1107048 hypothetical protein
blastp_uniprot_sprot sp|Q8W4A5|APO2_ARATH 6 450 + 445 Gaps:5 100.00 440 65.91 0.0 APO protein 2 chloroplastic OS Arabidopsis thaliana GN APO2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9XIR4|APO1_ARATH 89 449 + 361 Gaps:19 83.49 436 46.98 6e-108 APO protein 1 chloroplastic OS Arabidopsis thaliana GN APO1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FH50|APO3_ARATH 82 440 + 359 Gaps:11 90.30 402 47.93 3e-97 APO protein 3 mitochondrial OS Arabidopsis thaliana GN APO3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LSZ0|APO4_ARATH 140 434 + 295 Gaps:29 78.93 337 41.35 5e-57 APO protein 4 mitochondrial OS Arabidopsis thaliana GN APO4 PE 2 SV 2
rpsblast_cdd gnl|CDD|177726 51 450 + 400 Gaps:1 100.00 399 64.16 0.0 PLN00111 PLN00111 accumulation of photosystem one Provisional.
rpsblast_cdd gnl|CDD|203295 77 427 + 351 Gaps:23 96.62 207 65.50 7e-79 pfam05634 APO_RNA-bind APO RNA-binding. This domain contains conserved cysteine and histidine residues. It resembles zinc fingers and binds to zinc. This domain functions as an RNA-binding domain.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 310 449 140 PTHR10388 none none none
PANTHER 89 258 170 PTHR10388 none none none
PANTHER 89 258 170 PTHR10388:SF9 none none none
Pfam 80 277 198 PF05634 none APO RNA-binding IPR023342
Pfam 316 427 112 PF05634 none APO RNA-binding IPR023342
ProSiteProfiles 172 257 86 PS51499 none APO domain profile. IPR023342
PANTHER 310 449 140 PTHR10388:SF9 none none none
ProSiteProfiles 342 427 86 PS51499 none APO domain profile. IPR023342

0 Localization

0 Qtllist

0 Targeting