Protein : Qrob_P0070280.2 Q. robur
Protein Identifier  ? Qrob_P0070280.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=82) PF00190 - Cupin Gene Prediction Quality  validated
Protein length 

Sequence

Length: 223  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0045735 nutrient reservoir activity Functions in the storage of nutritious substrates.
GO:0030145 manganese ion binding Interacting selectively and non-covalently with manganese (Mn) ions.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103338264 1 221 + 221 Gaps:5 98.67 225 66.67 4e-98 germin-like protein subfamily T member 2
blastp_kegg lcl|pper:PRUPE_ppa011491mg 15 221 + 207 Gaps:4 99.52 208 68.12 1e-95 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1512950 4 222 + 219 Gaps:4 99.55 220 65.30 2e-95 Rhicadhesin receptor precursor putative (EC:1.15.1.1)
blastp_kegg lcl|cic:CICLE_v10027191mg 27 222 + 196 Gaps:3 88.24 221 70.77 7e-95 hypothetical protein
blastp_kegg lcl|cit:102611719 27 222 + 196 Gaps:3 88.24 221 70.77 7e-95 germin-like protein subfamily T member 2-like
blastp_kegg lcl|fve:101315342 1 221 + 221 Gaps:5 99.55 223 64.86 2e-93 germin-like protein subfamily T member 2-like
blastp_kegg lcl|tcc:TCM_045749 9 222 + 214 Gaps:6 80.61 263 66.04 8e-93 Germin-like protein subfamily T member 2
blastp_kegg lcl|pop:POPTR_0015s07940g 27 222 + 196 Gaps:4 89.09 220 68.37 3e-90 POPTRDRAFT_901916 hypothetical protein
blastp_kegg lcl|mdm:103455273 27 221 + 195 Gaps:4 89.45 218 68.72 3e-89 germin-like protein subfamily T member 2
blastp_kegg lcl|csv:101215347 1 221 + 221 Gaps:4 100.00 221 65.61 4e-89 germin-like protein subfamily T member 2-like
blastp_pdb 2ete_B 28 220 + 193 Gaps:8 98.01 201 55.33 3e-66 mol:protein length:201 Oxalate oxidase 1
blastp_pdb 2ete_A 28 220 + 193 Gaps:8 98.01 201 55.33 3e-66 mol:protein length:201 Oxalate oxidase 1
blastp_pdb 2et1_A 29 220 + 192 Gaps:8 97.51 201 55.61 4e-66 mol:protein length:201 Oxalate oxidase 1
blastp_pdb 1fi2_A 29 220 + 192 Gaps:8 97.51 201 55.61 4e-66 mol:protein length:201 OXALATE OXIDASE
blastp_pdb 2et7_A 28 220 + 193 Gaps:8 98.01 201 54.82 3e-65 mol:protein length:201 Oxalate oxidase 1
blastp_uniprot_sprot sp|P92995|GLT1_ARATH 11 221 + 211 Gaps:4 95.00 220 62.68 1e-83 Germin-like protein subfamily T member 1 OS Arabidopsis thaliana GN GLP1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LMC9|GLT2_ARATH 13 221 + 209 Gaps:4 94.09 220 62.32 1e-82 Germin-like protein subfamily T member 2 OS Arabidopsis thaliana GN At1g18980 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XZY1|GL32_ORYSJ 7 220 + 214 Gaps:11 97.75 222 50.69 9e-70 Putative germin-like protein 3-2 OS Oryza sativa subsp. japonica GN Os03g0651800 PE 3 SV 1
blastp_uniprot_sprot sp|Q9FZ27|GL22_ARATH 1 222 + 222 Gaps:9 99.09 219 50.23 5e-69 Germin-like protein subfamily 2 member 2 OS Arabidopsis thaliana GN At1g02335 PE 2 SV 1
blastp_uniprot_sprot sp|Q942A8|GL13_ORYSJ 7 220 + 214 Gaps:7 97.31 223 52.07 5e-69 Germin-like protein 1-3 OS Oryza sativa subsp. japonica GN GER8 PE 2 SV 1
blastp_uniprot_sprot sp|P94014|GL21_ARATH 25 220 + 196 Gaps:2 89.50 219 55.61 1e-68 Germin-like protein subfamily 2 member 1 OS Arabidopsis thaliana GN GLP4 PE 2 SV 2
blastp_uniprot_sprot sp|Q851K0|GL35_ORYSJ 11 220 + 210 Gaps:6 94.27 227 52.80 2e-68 Germin-like protein 3-5 OS Oryza sativa subsp. japonica GN Os03g0693900 PE 2 SV 1
blastp_uniprot_sprot sp|P45851|OXO2_HORVU 11 222 + 212 Gaps:8 96.43 224 53.24 2e-68 Oxalate oxidase 2 OS Hordeum vulgare PE 2 SV 1
blastp_uniprot_sprot sp|Q6I544|GL52_ORYSJ 22 220 + 199 Gaps:4 89.14 221 53.81 8e-68 Germin-like protein 5-1 OS Oryza sativa subsp. japonica GN Os05g0277500 PE 2 SV 1
blastp_uniprot_sprot sp|Q851K1|GL36_ORYSJ 15 220 + 206 Gaps:8 91.70 229 54.29 9e-68 Germin-like protein 3-6 OS Oryza sativa subsp. japonica GN Os03g0694000 PE 2 SV 1
rpsblast_cdd gnl|CDD|197904 75 213 + 139 Gaps:2 95.21 146 41.01 1e-28 smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
rpsblast_cdd gnl|CDD|201069 76 214 + 139 Gaps:16 92.81 139 34.11 3e-25 pfam00190 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
rpsblast_cdd gnl|CDD|32101 64 169 + 106 Gaps:5 77.10 131 31.68 1e-07 COG1917 COG1917 Uncharacterized conserved protein contains double-stranded beta-helix domain [Function unknown].

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 10 10 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 1 27 27 SIGNAL_PEPTIDE none Signal peptide region none
Gene3D 28 220 193 G3DSA:2.60.120.10 none none IPR014710
SMART 65 214 150 SM00835 none Cupin IPR006045
ProSitePatterns 109 122 14 PS00725 none Germin family signature. IPR019780
Phobius 28 222 195 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 29 219 191 SSF51182 none none IPR011051
Pfam 76 210 135 PF00190 none Cupin IPR006045
PANTHER 9 220 212 PTHR31238 none none none
PRINTS 144 164 21 PR00325 none Germin signature IPR001929
PRINTS 177 192 16 PR00325 none Germin signature IPR001929
PRINTS 114 134 21 PR00325 none Germin signature IPR001929
PANTHER 9 220 212 PTHR31238:SF7 none none none
Phobius 11 21 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 22 27 6 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none

4 Localization

Analysis Start End Length
SignalP_GRAM_NEGATIVE 1 27 26
SignalP_GRAM_POSITIVE 1 28 27
TMHMM 7 26 19
SignalP_EUK 1 27 26

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 27   Secretory pathway 1 0.977 0.015 NON-PLANT 27