Protein : Qrob_P0070130.2 Q. robur
Protein Identifier  ? Qrob_P0070130.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K15436 - transportin-3 Alias (in v1)  Qrob_P0174030.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1016  
Kegg Orthology  K15436
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103493952 1 1015 + 1015 Gaps:55 100.00 960 83.85 0.0 transportin-3
blastp_kegg lcl|csv:101215103 1 1015 + 1015 Gaps:63 100.00 968 82.75 0.0 transportin-3-like
blastp_kegg lcl|vvi:100243383 1 1015 + 1015 Gaps:55 100.00 960 84.27 0.0 transportin-3-like
blastp_kegg lcl|pper:PRUPE_ppa000926mg 1 1015 + 1015 Gaps:56 100.00 959 84.88 0.0 hypothetical protein
blastp_kegg lcl|gmx:100798786 1 1015 + 1015 Gaps:55 100.00 960 83.23 0.0 transportin-3-like
blastp_kegg lcl|gmx:100813996 1 1015 + 1015 Gaps:56 100.00 959 83.21 0.0 transportin-3-like
blastp_kegg lcl|cit:102620449 1 1014 + 1014 Gaps:56 99.48 963 82.67 0.0 transportin-3-like
blastp_kegg lcl|mdm:103437773 1 1015 + 1015 Gaps:83 100.00 986 82.45 0.0 transportin-3
blastp_kegg lcl|pmum:103338272 1 1015 + 1015 Gaps:56 100.00 959 83.00 0.0 transportin-3
blastp_kegg lcl|pxb:103958798 1 1015 + 1015 Gaps:82 100.00 985 81.52 0.0 transportin-3
blastp_pdb 2x1g_G 29 963 + 935 Gaps:138 93.61 971 22.88 8e-28 mol:protein length:971 CADMUS
blastp_pdb 2x1g_F 29 963 + 935 Gaps:138 93.61 971 22.88 8e-28 mol:protein length:971 CADMUS
blastp_pdb 2xwu_B 212 564 + 353 Gaps:43 35.10 963 26.63 1e-18 mol:protein length:963 IMPORTIN13
blastp_pdb 2x19_B 212 564 + 353 Gaps:43 35.10 963 26.63 1e-18 mol:protein length:963 IMPORTIN-13
blastp_uniprot_sprot sp|Q6P2B1|TNPO3_MOUSE 7 970 + 964 Gaps:127 96.97 923 26.93 8e-70 Transportin-3 OS Mus musculus GN Tnpo3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9Y5L0|TNPO3_HUMAN 7 970 + 964 Gaps:127 96.97 923 26.93 3e-69 Transportin-3 OS Homo sapiens GN TNPO3 PE 1 SV 3
blastp_uniprot_sprot sp|Q9USZ2|YNR7_SCHPO 6 992 + 987 Gaps:135 98.43 955 24.36 2e-49 Uncharacterized protein C11G11.07 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPBC11G11.07 PE 4 SV 2
blastp_uniprot_sprot sp|Q99189|MTR10_YEAST 7 643 + 637 Gaps:111 61.93 972 25.91 2e-25 mRNA transport regulator MTR10 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN MTR10 PE 1 SV 1
blastp_uniprot_sprot sp|A7YWD2|IPO13_BOVIN 5 564 + 560 Gaps:68 55.24 963 24.81 5e-25 Importin-13 OS Bos taurus GN IPO13 PE 2 SV 1
blastp_uniprot_sprot sp|Q8K0C1|IPO13_MOUSE 5 564 + 560 Gaps:86 55.24 963 25.38 7e-25 Importin-13 OS Mus musculus GN Ipo13 PE 2 SV 1
blastp_uniprot_sprot sp|Q9JM04|IPO13_RAT 5 564 + 560 Gaps:86 55.24 963 25.19 8e-24 Importin-13 OS Rattus norvegicus GN Ipo13 PE 2 SV 1
blastp_uniprot_sprot sp|Q5R974|IPO13_PONAB 212 564 + 353 Gaps:43 35.10 963 26.63 2e-18 Importin-13 OS Pongo abelii GN IPO13 PE 2 SV 1
blastp_uniprot_sprot sp|Q5ZIC8|IPO13_CHICK 212 564 + 353 Gaps:41 35.28 958 26.04 3e-18 Importin-13 OS Gallus gallus GN IPO13 PE 2 SV 1
blastp_uniprot_sprot sp|O94829|IPO13_HUMAN 212 564 + 353 Gaps:43 35.10 963 26.63 4e-18 Importin-13 OS Homo sapiens GN IPO13 PE 1 SV 3
rpsblast_cdd gnl|CDD|203927 98 261 + 164 Gaps:29 100.00 147 27.89 4e-14 pfam08389 Xpo1 Exportin 1-like protein. The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1 Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences and Ran-GTP and is involved in translocation of proteins out of the nucleus.
rpsblast_kog gnl|CDD|37292 23 1015 + 993 Gaps:140 99.82 559 47.49 1e-113 KOG2081 KOG2081 KOG2081 Nuclear transport regulator [Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|37233 6 967 + 962 Gaps:128 96.33 982 19.45 7e-33 KOG2022 KOG2022 KOG2022 Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure Intracellular trafficking secretion and vesicular transport].

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 266 276 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 7 151 145 PTHR12363 none none none
Phobius 591 609 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 197 197 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 316 334 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 277 296 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 430 718 289 SSF48371 none none IPR016024
SUPERFAMILY 780 894 115 SSF48371 none none IPR016024
SUPERFAMILY 1 313 313 SSF48371 none none IPR016024
Phobius 297 315 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 887 902 16 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 224 242 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 445 590 146 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 865 886 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 198 223 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 355 375 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 243 265 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 376 424 49 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 610 864 255 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 425 444 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 335 354 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

1 Localization

Analysis Start End Length
TMHMM 280 302 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting