Protein : Qrob_P0070080.2 Q. robur
Protein Identifier  ? Qrob_P0070080.2 Organism . Name  Quercus robur
Score  96.1 Score Type  egn
Protein Description  (M=162) PF01535//PF13041 - PPR repeat // PPR repeat family Gene Prediction Quality  validated
Protein length 

Sequence

Length: 785  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103455325 30 784 + 755 Gaps:37 68.74 1062 84.52 0.0 pentatricopeptide repeat-containing protein At1g74850 chloroplastic-like
blastp_kegg lcl|pmum:103338274 30 784 + 755 Gaps:32 82.53 876 84.92 0.0 pentatricopeptide repeat-containing protein At1g74850 chloroplastic
blastp_kegg lcl|mdm:103437768 30 784 + 755 Gaps:32 82.53 876 84.79 0.0 pentatricopeptide repeat-containing protein At1g74850 chloroplastic
blastp_kegg lcl|fve:101305182 1 784 + 784 Gaps:34 87.01 862 82.53 0.0 pentatricopeptide repeat-containing protein At1g74850 chloroplastic-like
blastp_kegg lcl|pxb:103958801 30 784 + 755 Gaps:32 82.53 876 84.92 0.0 pentatricopeptide repeat-containing protein At1g74850 chloroplastic
blastp_kegg lcl|tcc:TCM_011951 6 784 + 779 Gaps:38 86.96 859 81.53 0.0 Plastid transcriptionally active 2 isoform 1
blastp_kegg lcl|vvi:100251853 24 784 + 761 Gaps:38 83.20 869 84.51 0.0 pentatricopeptide repeat-containing protein At1g74850 chloroplastic-like
blastp_kegg lcl|pper:PRUPE_ppa001337mg 52 784 + 733 Gaps:30 82.71 850 85.78 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10018817mg 6 784 + 779 Gaps:45 87.03 871 82.19 0.0 hypothetical protein
blastp_kegg lcl|cit:102619593 6 784 + 779 Gaps:45 87.03 871 81.93 0.0 pentatricopeptide repeat-containing protein At1g74850 chloroplastic-like
blastp_uniprot_sprot sp|Q9S7Q2|PP124_ARATH 30 784 + 755 Gaps:34 84.34 862 79.37 0.0 Pentatricopeptide repeat-containing protein At1g74850 chloroplastic OS Arabidopsis thaliana GN PTAC2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIC9|PP178_ARATH 107 783 + 677 Gaps:80 68.30 918 29.35 1e-78 Pentatricopeptide repeat-containing protein At2g31400 chloroplastic OS Arabidopsis thaliana GN At2g31400 PE 2 SV 1
blastp_uniprot_sprot sp|O64624|PP163_ARATH 80 744 + 665 Gaps:63 83.82 822 44.12 2e-78 Pentatricopeptide repeat-containing protein At2g18940 chloroplastic OS Arabidopsis thaliana GN At2g18940 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LYZ9|PP362_ARATH 68 751 + 684 Gaps:86 82.78 819 42.04 4e-75 Pentatricopeptide repeat-containing protein At5g02860 OS Arabidopsis thaliana GN At5g02860 PE 2 SV 1
blastp_uniprot_sprot sp|Q8RWS8|PP199_ARATH 66 734 + 669 Gaps:119 88.20 822 39.31 3e-73 Pentatricopeptide repeat-containing protein At2g41720 OS Arabidopsis thaliana GN EMB2654 PE 2 SV 1
blastp_uniprot_sprot sp|Q5G1S8|PP241_ARATH 4 772 + 769 Gaps:178 84.31 1440 38.06 3e-57 Pentatricopeptide repeat-containing protein At3g18110 chloroplastic OS Arabidopsis thaliana GN EMB1270 PE 2 SV 2
blastp_uniprot_sprot sp|Q76C99|RF1_ORYSI 103 741 + 639 Gaps:95 88.75 791 48.29 5e-56 Protein Rf1 mitochondrial OS Oryza sativa subsp. indica GN Rf1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FLD8|PP408_ARATH 116 761 + 646 Gaps:108 81.56 678 44.48 2e-54 Pentatricopeptide repeat-containing protein At5g39980 chloroplastic OS Arabidopsis thaliana GN At5g39980 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LSL9|PP445_ARATH 105 744 + 640 Gaps:203 81.64 915 51.27 7e-54 Pentatricopeptide repeat-containing protein At5g65560 OS Arabidopsis thaliana GN At5g65560 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LFC5|PP360_ARATH 140 761 + 622 Gaps:124 86.15 729 50.80 2e-53 Pentatricopeptide repeat-containing protein At5g01110 OS Arabidopsis thaliana GN At5g01110 PE 2 SV 1
rpsblast_cdd gnl|CDD|178757 114 732 + 619 Gaps:127 40.38 1060 52.80 3e-31 PLN03218 PLN03218 maturation of RBCL 1 Provisional.
rpsblast_cdd gnl|CDD|178630 6 598 + 593 Gaps:106 77.19 697 39.96 3e-23 PLN03081 PLN03081 pentatricopeptide (PPR) repeat-containing protein Provisional.
rpsblast_cdd gnl|CDD|178626 125 611 + 487 Gaps:318 77.60 857 40.60 7e-20 PLN03077 PLN03077 Protein ECB2 Provisional.
rpsblast_cdd gnl|CDD|205222 177 435 + 259 Gaps:1 100.00 50 68.00 1e-10 pfam13041 PPR_2 PPR repeat family. This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.

40 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 642 773 132 PTHR24015 none none none
ProSiteProfiles 141 175 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
TIGRFAM 320 353 34 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 144 174 31 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 214 247 34 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 425 457 33 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 390 422 33 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 495 527 33 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 355 387 33 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 179 211 33 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 249 283 35 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 530 563 34 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
PANTHER 27 611 585 PTHR24015 none none none
ProSiteProfiles 247 281 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
PANTHER 27 611 585 PTHR24015:SF353 none none none
ProSiteProfiles 282 316 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
PANTHER 642 773 132 PTHR24015:SF353 none none none
ProSiteProfiles 527 561 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 387 421 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 386 433 48 PF13041 none PPR repeat family IPR002885
Pfam 246 293 48 PF13041 none PPR repeat family IPR002885
Pfam 176 224 49 PF13041 none PPR repeat family IPR002885
Pfam 527 574 48 PF13041 none PPR repeat family IPR002885
Pfam 316 361 46 PF13041 none PPR repeat family IPR002885
Pfam 460 488 29 PF01535 none PPR repeat IPR002885
Pfam 495 524 30 PF01535 none PPR repeat IPR002885
Pfam 144 173 30 PF01535 none PPR repeat IPR002885
ProSiteProfiles 698 732 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 105 135 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 176 210 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 32   Mitochondrion 3 0.011 0.778 NON-PLANT 32