Protein : Qrob_P0069060.2 Q. robur
Protein Identifier  ? Qrob_P0069060.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=6) KOG0834//KOG0835 - CDK9 kinase-activating protein cyclin T [Cell cycle control cell division chromosome partitioning]. // Cyclin L [General function prediction only]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 207  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity Any process that modulates the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity.
GO:0019901 protein kinase binding Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103492172 1 168 + 168 Gaps:81 40.86 443 62.43 6e-60 cyclin-L1-1
blastp_kegg lcl|tcc:TCM_043086 1 168 + 168 Gaps:81 39.61 457 62.43 8e-60 Arginine-rich cyclin 1
blastp_kegg lcl|mtr:MTR_5g010140 1 168 + 168 Gaps:81 40.40 448 61.88 4e-59 Cyclin-L1-1
blastp_kegg lcl|pxb:103934016 1 168 + 168 Gaps:81 40.58 446 61.88 5e-59 cyclin-L1-1-like
blastp_kegg lcl|csv:101207220 1 168 + 168 Gaps:81 40.86 443 61.88 5e-59 cyclin-L1-1-like
blastp_kegg lcl|pxb:103928350 1 168 + 168 Gaps:81 40.58 446 61.88 5e-59 cyclin-L1-1-like
blastp_kegg lcl|gmx:100820383 1 168 + 168 Gaps:81 40.67 445 61.88 9e-59 cyclin-L1-1-like
blastp_kegg lcl|vvi:100241975 1 168 + 168 Gaps:81 40.13 451 61.88 9e-59 cyclin-L1-1-like
blastp_kegg lcl|mus:103993654 1 168 + 168 Gaps:81 40.77 444 61.88 1e-58 cyclin-L1-1 isoform X1
blastp_kegg lcl|pvu:PHAVU_007G183500g 1 168 + 168 Gaps:81 40.49 447 60.77 2e-58 hypothetical protein
blastp_pdb 3tn8_B 9 172 + 164 Gaps:17 66.54 260 24.28 9e-06 mol:protein length:260 Cyclin-T1
blastp_pdb 3my1_B 9 172 + 164 Gaps:17 66.54 260 24.28 9e-06 mol:protein length:260 Cyclin-T1
blastp_pdb 3lq5_B 9 172 + 164 Gaps:17 66.54 260 24.28 9e-06 mol:protein length:260 Cyclin-T1
blastp_pdb 3blr_B 9 172 + 164 Gaps:17 66.54 260 24.28 9e-06 mol:protein length:260 Cyclin-T1
blastp_pdb 3blq_B 9 172 + 164 Gaps:17 66.54 260 24.28 9e-06 mol:protein length:260 Cyclin-T1
blastp_pdb 3blh_B 9 172 + 164 Gaps:17 66.54 260 24.28 9e-06 mol:protein length:260 Cyclin-T1
blastp_uniprot_sprot sp|Q8RWV3|CCL11_ARATH 1 168 + 168 Gaps:81 43.51 416 59.12 1e-57 Cyclin-L1-1 OS Arabidopsis thaliana GN CYCL1-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9AS36|CCL11_ORYSJ 1 168 + 168 Gaps:20 42.15 427 57.22 2e-54 Cyclin-L1-1 OS Oryza sativa subsp. japonica GN CYCL1-1 PE 2 SV 1
blastp_uniprot_sprot sp|Q7ZVX0|CCNL1_DANRE 2 168 + 167 Gaps:15 36.14 498 35.00 3e-22 Cyclin-L1 OS Danio rerio GN ccnl1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9JJA7|CCNL2_MOUSE 2 168 + 167 Gaps:16 34.94 518 35.91 9e-22 Cyclin-L2 OS Mus musculus GN Ccnl2 PE 2 SV 1
blastp_uniprot_sprot sp|Q5I0H5|CCNL2_RAT 2 168 + 167 Gaps:16 34.81 520 35.91 1e-21 Cyclin-L2 OS Rattus norvegicus GN Ccnl2 PE 2 SV 2
blastp_uniprot_sprot sp|Q96S94|CCNL2_HUMAN 2 168 + 167 Gaps:16 34.81 520 35.36 1e-21 Cyclin-L2 OS Homo sapiens GN CCNL2 PE 1 SV 1
blastp_uniprot_sprot sp|Q6GN15|CCNL1_XENLA 2 168 + 167 Gaps:16 36.49 496 35.36 2e-21 Cyclin-L1 OS Xenopus laevis GN ccnl1 PE 2 SV 2
blastp_uniprot_sprot sp|Q5ZJP9|CCNL1_CHICK 2 168 + 167 Gaps:16 33.90 534 34.81 7e-21 Cyclin-L1 OS Gallus gallus GN CCNL1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9R1Q2|CCNL1_RAT 2 168 + 167 Gaps:16 34.35 527 34.81 2e-20 Cyclin-L1 OS Rattus norvegicus GN Ccnl1 PE 1 SV 1
blastp_uniprot_sprot sp|Q52KE7|CCNL1_MOUSE 2 168 + 167 Gaps:16 34.02 532 34.81 2e-20 Cyclin-L1 OS Mus musculus GN Ccnl1 PE 1 SV 1
rpsblast_kog gnl|CDD|36053 13 168 + 156 Gaps:82 46.32 367 38.82 2e-28 KOG0835 KOG0835 KOG0835 Cyclin L [General function prediction only].
rpsblast_kog gnl|CDD|36052 13 168 + 156 Gaps:16 51.39 323 28.31 3e-13 KOG0834 KOG0834 KOG0834 CDK9 kinase-activating protein cyclin T [Cell cycle control cell division chromosome partitioning].

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 57 57 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 81 168 88 PTHR10026:SF13 none none none
SUPERFAMILY 9 50 42 SSF47954 none none IPR013763
SUPERFAMILY 83 134 52 SSF47954 none none IPR013763
PANTHER 2 49 48 PTHR10026:SF13 none none none
PANTHER 2 49 48 PTHR10026 none none IPR015429
Phobius 83 206 124 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 81 168 88 PTHR10026 none none IPR015429
Gene3D 68 112 45 G3DSA:1.10.472.10 none none IPR013763
Gene3D 5 51 47 G3DSA:1.10.472.10 none none IPR013763
Gene3D 113 170 58 G3DSA:1.10.472.10 none none IPR013763
Phobius 58 82 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 139 171 33 SSF47954 none none IPR013763

2 Localization

Analysis Start End Length
TMHMM 170 192 22
TMHMM 58 80 22

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting