Protein : Qrob_P0067670.2 Q. robur
Protein Identifier  ? Qrob_P0067670.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=16) 3.2.1.67 - Galacturan 1,4-alpha-galacturonidase. Code Enzyme  EC:3.2.1.67
Gene Prediction Quality  validated Protein length 

Sequence

Length: 395  
Kegg Orthology  K01213
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103498752 24 390 + 367 Gaps:6 85.28 428 61.64 2e-154 exopolygalacturonase-like
blastp_kegg lcl|mdm:103442964 4 389 + 386 Gaps:4 97.50 400 56.92 4e-154 exopolygalacturonase-like
blastp_kegg lcl|pxb:103955042 4 389 + 386 Gaps:4 97.50 400 56.92 4e-154 exopolygalacturonase-like
blastp_kegg lcl|tcc:TCM_002289 5 390 + 386 Gaps:9 97.04 405 55.73 5e-154 Polygalacturonase
blastp_kegg lcl|tcc:TCM_002294 1 390 + 390 Gaps:9 77.09 515 56.42 1e-153 Pectin lyase-like superfamily protein putative
blastp_kegg lcl|mdm:103412274 1 389 + 389 Gaps:6 99.00 399 57.72 2e-153 exopolygalacturonase-like
blastp_kegg lcl|pxb:103927064 1 389 + 389 Gaps:6 99.00 399 57.22 2e-153 exopolygalacturonase-like
blastp_kegg lcl|mdm:103453494 1 389 + 389 Gaps:6 99.00 399 57.47 6e-153 exopolygalacturonase-like
blastp_kegg lcl|tcc:TCM_043174 24 389 + 366 Gaps:5 92.25 400 59.89 2e-151 Pectin lyase-like superfamily protein putative
blastp_kegg lcl|vvi:100247792 25 389 + 365 Gaps:4 92.68 396 58.04 1e-150 polygalacturonase-like
blastp_pdb 1nhc_F 96 376 + 281 Gaps:53 79.17 336 30.83 5e-16 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_E 96 376 + 281 Gaps:53 79.17 336 30.83 5e-16 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_D 96 376 + 281 Gaps:53 79.17 336 30.83 5e-16 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_C 96 376 + 281 Gaps:53 79.17 336 30.83 5e-16 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_B 96 376 + 281 Gaps:53 79.17 336 30.83 5e-16 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_A 96 376 + 281 Gaps:53 79.17 336 30.83 5e-16 mol:protein length:336 Polygalacturonase I
blastp_pdb 1bhe_A 53 360 + 308 Gaps:46 84.04 376 30.70 7e-16 mol:protein length:376 POLYGALACTURONASE
blastp_pdb 1rmg_A 21 358 + 338 Gaps:48 75.83 422 28.44 7e-14 mol:protein length:422 RHAMNOGALACTURONASE A
blastp_pdb 1hg8_A 116 373 + 258 Gaps:21 75.36 349 26.62 1e-12 mol:protein length:349 ENDOPOLYGALACTURONASE
blastp_pdb 1ib4_B 116 376 + 261 Gaps:24 74.63 339 27.67 4e-12 mol:protein length:339 POLYGALACTURONASE
blastp_uniprot_sprot sp|Q6H9K0|PGLR2_PLAAC 20 386 + 367 Gaps:3 97.61 377 56.25 5e-146 Exopolygalacturonase (Fragment) OS Platanus acerifolia GN plaa2 PE 1 SV 1
blastp_uniprot_sprot sp|Q39766|PGLR_GOSBA 1 390 + 390 Gaps:10 97.30 407 52.27 2e-142 Polygalacturonase OS Gossypium barbadense GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|Q39786|PGLR_GOSHI 1 390 + 390 Gaps:10 97.30 407 52.02 3e-142 Polygalacturonase OS Gossypium hirsutum GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|P24548|PGLR_OENOR 37 390 + 354 Gaps:3 98.07 362 56.06 7e-138 Exopolygalacturonase (Fragment) OS Oenothera organensis PE 2 SV 1
blastp_uniprot_sprot sp|Q05967|PGLR_TOBAC 12 390 + 379 Gaps:7 95.45 396 50.00 5e-131 Polygalacturonase OS Nicotiana tabacum GN PG1 PE 2 SV 1
blastp_uniprot_sprot sp|P35337|PGLR_BRANA 1 389 + 389 Gaps:7 97.23 397 50.26 6e-131 Polygalacturonase OS Brassica napus PE 2 SV 1
blastp_uniprot_sprot sp|Q40312|PGLR_MEDSA 8 389 + 382 Gaps:13 91.45 421 50.13 9e-125 Polygalacturonase OS Medicago sativa PE 2 SV 1
blastp_uniprot_sprot sp|P49063|PGLR2_ARATH 22 390 + 369 Gaps:2 83.56 444 47.17 4e-116 Exopolygalacturonase clone GBGA483 OS Arabidopsis thaliana GN At3g07850 PE 2 SV 2
blastp_uniprot_sprot sp|P26216|PGLR1_MAIZE 22 389 + 368 Gaps:4 90.73 410 45.43 6e-108 Exopolygalacturonase OS Zea mays GN PG1 PE 1 SV 1
blastp_uniprot_sprot sp|P35338|PGLR2_MAIZE 22 389 + 368 Gaps:4 90.73 410 45.16 1e-107 Exopolygalacturonase OS Zea mays GN PG9 PE 2 SV 1

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 4 4 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Gene3D 11 391 381 G3DSA:2.160.20.10 none none IPR012334
SUPERFAMILY 10 390 381 SSF51126 none none IPR011050
Phobius 1 21 21 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 5 16 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SMART 173 199 27 SM00710 none Parallel beta-helix repeats IPR006626
SMART 200 221 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 283 304 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 253 274 22 SM00710 none Parallel beta-helix repeats IPR006626
Phobius 22 394 373 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 5 390 386 PTHR31375 none none none
PANTHER 5 390 386 PTHR31375:SF2 none none none
Phobius 17 21 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Pfam 55 377 323 PF00295 none Glycosyl hydrolases family 28 IPR000743

1 Localization

Analysis Start End Length
SignalP_EUK 1 21 20

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 21   Secretory pathway 1 0.963 0.014 NON-PLANT 21