Protein : Qrob_P0067520.2 Q. robur
Protein Identifier  ? Qrob_P0067520.2 Organism . Name  Quercus robur
Score  84.1 Score Type  egn
Protein Description  (M=1) K14312 - nuclear pore complex protein Nup155 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 885  
Kegg Orthology  K14312
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006913 nucleocytoplasmic transport The directed movement of molecules between the nucleus and the cytoplasm.
GO:0005643 nuclear pore Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
GO:0017056 structural constituent of nuclear pore The action of a molecule that contributes to the structural integrity of the nuclear pore complex.

19 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_011050 1 836 + 836 Gaps:32 51.67 1494 86.92 0.0 Nucleoporin 155
blastp_kegg lcl|cic:CICLE_v10014036mg 1 856 + 856 Gaps:3 51.74 1492 84.59 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa000191mg 1 856 + 856 Gaps:10 52.68 1490 85.22 0.0 hypothetical protein
blastp_kegg lcl|cit:102629346 1 856 + 856 Gaps:33 51.74 1492 84.97 0.0 nuclear pore complex protein Nup155-like
blastp_kegg lcl|vvi:100243944 1 860 + 860 Gaps:11 51.54 1496 84.70 0.0 nuclear pore complex protein Nup155-like
blastp_kegg lcl|rcu:RCOM_0598070 1 836 + 836 Gaps:33 51.68 1490 84.81 0.0 protein with unknown function
blastp_kegg lcl|pop:POPTR_0008s13430g 1 836 + 836 Gaps:39 52.34 1494 82.35 0.0 POPTRDRAFT_656975 hypothetical protein
blastp_kegg lcl|pmum:103321440 1 856 + 856 Gaps:10 52.68 1490 84.20 0.0 nuclear pore complex protein Nup155
blastp_kegg lcl|gmx:100794352 1 856 + 856 Gaps:10 51.62 1486 83.96 0.0 nuclear pore complex protein Nup155-like
blastp_kegg lcl|gmx:100798527 1 856 + 856 Gaps:13 51.65 1485 82.92 0.0 nuclear pore complex protein Nup155-like
blastp_uniprot_sprot sp|O75694|NU155_HUMAN 14 767 + 754 Gaps:104 48.89 1391 32.65 5e-39 Nuclear pore complex protein Nup155 OS Homo sapiens GN NUP155 PE 1 SV 1
blastp_uniprot_sprot sp|P37199|NU155_RAT 82 767 + 686 Gaps:86 43.31 1390 33.06 6e-38 Nuclear pore complex protein Nup155 OS Rattus norvegicus GN Nup155 PE 1 SV 1
blastp_uniprot_sprot sp|Q99P88|NU155_MOUSE 56 767 + 712 Gaps:88 45.00 1391 31.79 3e-37 Nuclear pore complex protein Nup155 OS Mus musculus GN Nup155 PE 1 SV 1
blastp_uniprot_sprot sp|Q9URX8|NG06_SCHPO 54 766 + 713 Gaps:120 44.03 1315 31.95 2e-21 Probable nucleoporin C890.06 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPAC890.06 PE 3 SV 3
blastp_uniprot_sprot sp|P38181|NU170_YEAST 62 235 + 174 Gaps:14 11.19 1502 30.36 4e-19 Nucleoporin NUP170 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN NUP170 PE 1 SV 1
rpsblast_cdd gnl|CDD|190553 259 765 + 507 Gaps:117 81.93 559 25.98 6e-45 pfam03177 Nucleoporin_C Non-repetitive/WGA-negative nucleoporin C-terminal. This is the C-termainl half of a family of nucleoporin proteins. Nucleoporins are the main components of the nuclear pore complex in eukaryotic cells and mediate bidirectional nucleocytoplasmic transport especially of mRNA and proteins. Two nucleoporin classes are known: one is characterized by the FG repeat pfam03093 the other is represented by this family and lacks any repeats. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore.
rpsblast_cdd gnl|CDD|204070 54 235 + 182 Gaps:31 44.04 411 34.25 4e-31 pfam08801 Nucleoporin_N Nup133 N terminal like. Nup133 is a nucleoporin that is crucial for nuclear pore complex (NPC) biogenesis. The N terminal forms a seven-bladed beta propeller structure. This family now contains other sized nucleoporins including Nup155 Nup8 Nuo132 Nup15 and Nup170.
rpsblast_cdd gnl|CDD|34896 38 766 + 729 Gaps:113 47.35 1263 27.42 5e-22 COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion].
rpsblast_kog gnl|CDD|37111 6 844 + 839 Gaps:93 52.17 1311 37.43 1e-90 KOG1900 KOG1900 KOG1900 Nuclear pore complex Nup155 component (D Nup154 sc Nup157/Nup170) [Nuclear structure Intracellular trafficking secretion and vesicular transport].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 269 765 497 PF03177 "Reactome:REACT_15518","Reactome:REACT_474","Reactome:REACT_6185" Non-repetitive/WGA-negative nucleoporin C-terminal IPR007187
Coils 460 481 22 Coil none none none
Pfam 56 236 181 PF08801 "Reactome:REACT_15518","Reactome:REACT_474","Reactome:REACT_6185" Nup133 N terminal like IPR014908
PANTHER 230 580 351 PTHR10350:SF6 none none none
PANTHER 606 706 101 PTHR10350:SF6 none none none
PANTHER 230 580 351 PTHR10350 none none IPR004870
PANTHER 726 766 41 PTHR10350 none none IPR004870
PANTHER 726 766 41 PTHR10350:SF6 none none none
PANTHER 606 706 101 PTHR10350 none none IPR004870
Coils 733 754 22 Coil none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting