Protein : Qrob_P0060680.2 Q. robur
Protein Identifier  ? Qrob_P0060680.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=5) K13154 - U11/U12 small nuclear ribonucleoprotein 31 kDa protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 182  
Kegg Orthology  K13154
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100251234 21 142 + 122 Gaps:10 44.80 250 61.61 8e-36 zinc finger CCHC-type and RNA-binding motif-containing protein 1-like
blastp_kegg lcl|pop:POPTR_0010s23420g 26 142 + 117 Gaps:14 41.87 246 66.99 1e-35 POPTRDRAFT_228125 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0721970 21 142 + 122 Gaps:11 51.15 217 70.27 7e-35 RNA binding motif protein putative
blastp_kegg lcl|tcc:TCM_043293 25 142 + 118 Gaps:3 44.23 260 64.35 1e-34 RNA recognition motif and CCHC-type zinc finger domains containing protein
blastp_kegg lcl|pper:PRUPE_ppa010566mg 24 142 + 119 Gaps:18 42.04 245 71.84 7e-34 hypothetical protein
blastp_kegg lcl|mdm:103427798 24 142 + 119 Gaps:13 41.41 256 67.92 1e-33 zinc finger CCHC-type and RNA-binding motif-containing protein 1
blastp_kegg lcl|pmum:103332327 24 142 + 119 Gaps:18 41.04 251 68.93 4e-33 zinc finger CCHC-type and RNA-binding motif-containing protein 1
blastp_kegg lcl|cam:101498059 28 143 + 116 Gaps:1 47.72 241 58.26 7e-33 zinc finger CCHC-type and RNA-binding motif-containing protein 1-like
blastp_kegg lcl|cic:CICLE_v10032576mg 28 142 + 115 Gaps:4 45.49 244 61.26 1e-32 hypothetical protein
blastp_kegg lcl|cit:102617595 28 142 + 115 Gaps:4 45.49 244 61.26 1e-32 zinc finger CCHC-type and RNA-binding motif-containing protein 1-like
blastp_pdb 2e5h_A 76 143 + 68 none 72.34 94 51.47 2e-18 mol:protein length:94 Zinc finger CCHC-type and RNA-binding motif-c
blastp_pdb 1sxl_A 81 164 + 84 none 86.60 97 29.76 3e-07 mol:protein length:97 SEX-LETHAL PROTEIN PROTEIN
blastp_pdb 1g2e_A 81 160 + 80 Gaps:5 44.91 167 38.67 4e-07 mol:protein length:167 PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD
blastp_pdb 1fxl_A 81 160 + 80 Gaps:5 44.91 167 38.67 4e-07 mol:protein length:167 PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD
blastp_pdb 1whw_A 83 151 + 69 none 69.70 99 31.88 4e-07 mol:protein length:99 hypothetical protein RIKEN CDNA 1200009A02
blastp_pdb 3sxl_C 75 164 + 90 none 48.91 184 28.89 2e-06 mol:protein length:184 PROTEIN (SEX-LETHAL)
blastp_pdb 3sxl_B 75 164 + 90 none 48.91 184 28.89 2e-06 mol:protein length:184 PROTEIN (SEX-LETHAL)
blastp_pdb 3sxl_A 75 164 + 90 none 48.91 184 28.89 2e-06 mol:protein length:184 PROTEIN (SEX-LETHAL)
blastp_pdb 1b7f_B 81 138 + 58 none 34.52 168 36.21 3e-06 mol:protein length:168 PROTEIN (SXL-LETHAL PROTEIN)
blastp_pdb 1b7f_A 81 138 + 58 none 34.52 168 36.21 3e-06 mol:protein length:168 PROTEIN (SXL-LETHAL PROTEIN)
blastp_uniprot_sprot sp|Q499V6|ZCRB1_RAT 73 142 + 70 none 32.26 217 54.29 2e-19 Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS Rattus norvegicus GN Zcrb1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CZ96|ZCRB1_MOUSE 73 142 + 70 none 32.26 217 54.29 2e-19 Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS Mus musculus GN Zcrb1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8TBF4|ZCRB1_HUMAN 73 142 + 70 none 32.26 217 52.86 2e-18 Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS Homo sapiens GN ZCRB1 PE 1 SV 2
blastp_uniprot_sprot sp|Q56JZ7|ZCRB1_BOVIN 73 142 + 70 none 32.26 217 52.86 3e-18 Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS Bos taurus GN ZCRB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6DJI9|ZCRB1_XENLA 73 142 + 70 none 32.11 218 52.86 3e-18 Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS Xenopus laevis GN zcrb1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5SP50|ZCRB1_DANRE 73 142 + 70 none 32.11 218 52.86 9e-18 Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS Danio rerio GN zcrb1 PE 2 SV 1
blastp_uniprot_sprot sp|Q4WJT7|MRD1_ASPFU 81 151 + 71 none 8.61 825 38.03 9e-08 Multiple RNA-binding domain-containing protein 1 OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN mrd1 PE 3 SV 1
blastp_uniprot_sprot sp|A7SKE9|EIF3G_NEMVE 40 145 + 106 Gaps:18 35.37 294 38.46 1e-07 Eukaryotic translation initiation factor 3 subunit G OS Nematostella vectensis GN v1g171563 PE 3 SV 1
blastp_uniprot_sprot sp|Q5B630|PABP_EMENI 50 143 + 94 Gaps:5 13.52 732 30.30 2e-07 Polyadenylate-binding protein cytoplasmic and nuclear OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN pab1 PE 2 SV 2
blastp_uniprot_sprot sp|Q54WM4|EIF3G_DICDI 48 157 + 110 Gaps:9 50.21 233 32.48 3e-07 Eukaryotic translation initiation factor 3 subunit G OS Dictyostelium discoideum GN eif3G PE 3 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 52 143 92 G3DSA:3.30.70.330 none none IPR012677
SMART 82 155 74 SM00360 none RNA recognition motif IPR000504
Pfam 86 142 57 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
PANTHER 75 142 68 PTHR23139:SF52 none none none
ProSiteProfiles 81 149 69 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
SUPERFAMILY 39 142 104 SSF54928 none none none
PANTHER 75 142 68 PTHR23139 none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting