Protein : Qrob_P0060100.2 Q. robur
Protein Identifier  ? Qrob_P0060100.2 Organism . Name  Quercus robur
Score  82.0 Score Type  egn
Protein Description  (M=8) K13126 - polyadenylate-binding protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 222  
Kegg Orthology  K13126
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103320358 14 221 + 208 Gaps:2 31.64 651 83.98 7e-113 polyadenylate-binding protein 2-like
blastp_kegg lcl|pper:PRUPE_ppa002618mg 14 221 + 208 Gaps:2 31.64 651 83.98 7e-113 hypothetical protein
blastp_kegg lcl|gmx:100811385 14 221 + 208 Gaps:2 31.50 654 86.41 2e-105 polyadenylate-binding protein 8-like
blastp_kegg lcl|tcc:TCM_033795 14 221 + 208 Gaps:4 31.79 648 82.52 3e-101 Poly(A) binding protein 8 isoform 1
blastp_kegg lcl|vvi:100262903 16 221 + 206 Gaps:1 31.65 654 81.16 6e-100 polyadenylate-binding protein 2-like
blastp_kegg lcl|mus:103981054 16 221 + 206 Gaps:3 31.75 652 78.26 9e-100 polyadenylate-binding protein 2-like
blastp_kegg lcl|mus:103973778 16 221 + 206 Gaps:4 31.61 658 78.37 1e-99 polyadenylate-binding protein 2-like isoform X1
blastp_kegg lcl|vvi:100255846 14 220 + 207 Gaps:1 32.50 640 85.10 6e-99 polyadenylate-binding protein 2-like
blastp_kegg lcl|mdm:103410717 14 215 + 202 Gaps:2 93.90 213 83.00 3e-95 polyadenylate-binding protein 8-like
blastp_kegg lcl|gmx:100813735 16 221 + 206 Gaps:1 31.64 648 79.02 4e-95 polyadenylate-binding protein 8-like
blastp_pdb 2dyd_A 123 201 + 79 none 92.94 85 83.54 1e-36 mol:protein length:85 Poly(A)-binding protein
blastp_pdb 1nmr_A 125 196 + 72 none 84.71 85 56.94 7e-18 mol:protein length:85 poly(A)-binding protein
blastp_pdb 3kur_H 118 196 + 79 Gaps:4 94.94 79 52.00 3e-17 mol:protein length:79 Polyadenylate-binding protein 1
blastp_pdb 3kur_G 118 196 + 79 Gaps:4 94.94 79 52.00 3e-17 mol:protein length:79 Polyadenylate-binding protein 1
blastp_pdb 3kur_F 118 196 + 79 Gaps:4 94.94 79 52.00 3e-17 mol:protein length:79 Polyadenylate-binding protein 1
blastp_pdb 3kur_E 118 196 + 79 Gaps:4 94.94 79 52.00 3e-17 mol:protein length:79 Polyadenylate-binding protein 1
blastp_pdb 3kur_D 118 196 + 79 Gaps:4 94.94 79 52.00 3e-17 mol:protein length:79 Polyadenylate-binding protein 1
blastp_pdb 3kur_C 118 196 + 79 Gaps:4 94.94 79 52.00 3e-17 mol:protein length:79 Polyadenylate-binding protein 1
blastp_pdb 3kur_B 118 196 + 79 Gaps:4 94.94 79 52.00 3e-17 mol:protein length:79 Polyadenylate-binding protein 1
blastp_pdb 3kur_A 118 196 + 79 Gaps:4 94.94 79 52.00 3e-17 mol:protein length:79 Polyadenylate-binding protein 1
blastp_uniprot_sprot sp|Q9FXA2|PABP8_ARATH 16 220 + 205 Gaps:12 31.45 671 69.67 5e-69 Polyadenylate-binding protein 8 OS Arabidopsis thaliana GN PAB8 PE 1 SV 1
blastp_uniprot_sprot sp|O22173|PABP4_ARATH 16 219 + 204 Gaps:26 30.51 662 67.33 2e-68 Polyadenylate-binding protein 4 OS Arabidopsis thaliana GN PAB4 PE 1 SV 1
blastp_uniprot_sprot sp|P42731|PABP2_ARATH 16 216 + 201 Gaps:25 28.30 629 67.98 4e-53 Polyadenylate-binding protein 2 OS Arabidopsis thaliana GN PAB2 PE 1 SV 1
blastp_uniprot_sprot sp|O64380|PABP3_ARATH 16 217 + 202 Gaps:13 29.85 660 47.72 3e-34 Polyadenylate-binding protein 3 OS Arabidopsis thaliana GN PAB3 PE 2 SV 1
blastp_uniprot_sprot sp|Q05196|PABP5_ARATH 16 214 + 199 Gaps:15 29.03 682 48.48 3e-33 Polyadenylate-binding protein 5 OS Arabidopsis thaliana GN PAB5 PE 1 SV 3
blastp_uniprot_sprot sp|Q5B630|PABP_EMENI 20 207 + 188 Gaps:55 29.64 732 38.25 3e-17 Polyadenylate-binding protein cytoplasmic and nuclear OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN pab1 PE 2 SV 2
blastp_uniprot_sprot sp|Q6DEY7|EPAB_XENTR 128 215 + 88 Gaps:3 13.51 629 50.59 2e-16 Embryonic polyadenylate-binding protein OS Xenopus tropicalis GN epabp PE 2 SV 1
blastp_uniprot_sprot sp|P21187|PABP_DROME 127 195 + 69 none 10.88 634 52.17 2e-16 Polyadenylate-binding protein OS Drosophila melanogaster GN pAbp PE 1 SV 3
blastp_uniprot_sprot sp|A1CRM1|PABP_ASPCL 20 208 + 189 Gaps:41 30.24 754 38.60 1e-15 Polyadenylate-binding protein cytoplasmic and nuclear OS Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN pab1 PE 3 SV 1
blastp_uniprot_sprot sp|Q13310|PABP4_HUMAN 128 214 + 87 Gaps:2 13.20 644 47.06 2e-15 Polyadenylate-binding protein 4 OS Homo sapiens GN PABPC4 PE 1 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 126 195 70 PF00658 none Poly-adenylate binding protein, unique domain IPR002004
PANTHER 13 216 204 PTHR24011 none none none
ProSiteProfiles 123 200 78 PS51309 none Poly(A)-binding protein C-terminal (PABC) domain profile. IPR002004
PANTHER 13 216 204 PTHR24011:SF258 none none none
SMART 135 198 64 SM00517 none C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. IPR002004
Gene3D 122 204 83 G3DSA:1.10.1900.10 none none IPR002004
SUPERFAMILY 64 210 147 SSF63570 none none IPR002004

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting