Protein : Qrob_P0060090.2 Q. robur
Protein Identifier  ? Qrob_P0060090.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0109//KOG0110//KOG0117//KOG0123//KOG0127//KOG0131//KOG0144//KOG0145//KOG0148//KOG4212 - RNA-binding protein LARK contains RRM and retroviral-type Zn-finger domains [RNA processing and modification General function prediction only]. // RNA-binding protein (RRM superfamily) [General function prediction only]. // Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]. // Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification Translation ribosomal structure and biogenesis]. // Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]. // Splicing factor 3b subunit 4 [RNA processing and modification]. // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]. // RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]. // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification Translation ribosomal structure and biogenesis]. // RNA-binding protein hnRNP-M [RNA processing and modification]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 486  
Kegg Orthology  K13126
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0014s02550g 1 445 + 445 Gaps:7 68.82 651 84.38 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa002618mg 1 445 + 445 Gaps:4 68.97 651 81.74 0.0 hypothetical protein
blastp_kegg lcl|pmum:103320358 1 445 + 445 Gaps:4 68.97 651 81.51 0.0 polyadenylate-binding protein 2-like
blastp_kegg lcl|pop:POPTR_0002s12570g 1 440 + 440 Gaps:8 67.28 657 84.16 0.0 POPTRDRAFT_816470 hypothetical protein
blastp_kegg lcl|cit:102628035 1 445 + 445 Gaps:6 68.56 652 82.33 0.0 polyadenylate-binding protein 8-like
blastp_kegg lcl|cic:CICLE_v10000537mg 1 440 + 440 Gaps:6 67.90 651 82.35 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_001G023500g 1 445 + 445 Gaps:8 68.97 651 81.29 0.0 hypothetical protein
blastp_kegg lcl|gmx:100811385 1 445 + 445 Gaps:7 69.11 654 80.09 0.0 polyadenylate-binding protein 8-like
blastp_kegg lcl|mtr:MTR_1g019150 1 445 + 445 Gaps:11 69.55 647 80.44 0.0 Polyadenylate-binding protein
blastp_kegg lcl|tcc:TCM_033795 1 445 + 445 Gaps:7 68.83 648 81.61 0.0 Poly(A) binding protein 8 isoform 1
blastp_pdb 1cvj_H 22 398 + 377 Gaps:27 97.37 190 69.73 1e-72 mol:protein length:190 POLYADENYLATE BINDING PROTEIN 1
blastp_pdb 1cvj_G 22 398 + 377 Gaps:27 97.37 190 69.73 1e-72 mol:protein length:190 POLYADENYLATE BINDING PROTEIN 1
blastp_pdb 1cvj_F 22 398 + 377 Gaps:27 97.37 190 69.73 1e-72 mol:protein length:190 POLYADENYLATE BINDING PROTEIN 1
blastp_pdb 1cvj_E 22 398 + 377 Gaps:27 97.37 190 69.73 1e-72 mol:protein length:190 POLYADENYLATE BINDING PROTEIN 1
blastp_pdb 1cvj_D 22 398 + 377 Gaps:27 97.37 190 69.73 1e-72 mol:protein length:190 POLYADENYLATE BINDING PROTEIN 1
blastp_pdb 1cvj_C 22 398 + 377 Gaps:27 97.37 190 69.73 1e-72 mol:protein length:190 POLYADENYLATE BINDING PROTEIN 1
blastp_pdb 1cvj_B 22 398 + 377 Gaps:27 97.37 190 69.73 1e-72 mol:protein length:190 POLYADENYLATE BINDING PROTEIN 1
blastp_pdb 1cvj_A 22 398 + 377 Gaps:27 97.37 190 69.73 1e-72 mol:protein length:190 POLYADENYLATE BINDING PROTEIN 1
blastp_pdb 2k8g_A 107 393 + 287 Gaps:3 97.89 95 75.27 4e-37 mol:protein length:95 Polyadenylate-binding protein 1
blastp_pdb 2d9p_A 23 393 + 371 Gaps:6 95.15 103 70.41 7e-30 mol:protein length:103 Polyadenylate-binding protein 3
blastp_uniprot_sprot sp|P42731|PABP2_ARATH 1 442 + 442 Gaps:8 71.54 629 69.56 0.0 Polyadenylate-binding protein 2 OS Arabidopsis thaliana GN PAB2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FXA2|PABP8_ARATH 27 440 + 414 none 61.70 671 71.01 0.0 Polyadenylate-binding protein 8 OS Arabidopsis thaliana GN PAB8 PE 1 SV 1
blastp_uniprot_sprot sp|O22173|PABP4_ARATH 29 445 + 417 Gaps:1 62.84 662 69.47 0.0 Polyadenylate-binding protein 4 OS Arabidopsis thaliana GN PAB4 PE 1 SV 1
blastp_uniprot_sprot sp|O64380|PABP3_ARATH 4 403 + 400 Gaps:5 60.45 660 61.65 1e-167 Polyadenylate-binding protein 3 OS Arabidopsis thaliana GN PAB3 PE 2 SV 1
blastp_uniprot_sprot sp|Q05196|PABP5_ARATH 28 446 + 419 Gaps:12 62.32 682 57.41 1e-162 Polyadenylate-binding protein 5 OS Arabidopsis thaliana GN PAB5 PE 1 SV 3
blastp_uniprot_sprot sp|P11940|PABP1_HUMAN 19 423 + 405 Gaps:43 63.52 636 64.60 6e-152 Polyadenylate-binding protein 1 OS Homo sapiens GN PABPC1 PE 1 SV 2
blastp_uniprot_sprot sp|P61286|PABP1_BOVIN 19 423 + 405 Gaps:43 63.52 636 64.60 6e-152 Polyadenylate-binding protein 1 OS Bos taurus GN PABPC1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9EPH8|PABP1_RAT 19 423 + 405 Gaps:43 63.52 636 64.36 1e-151 Polyadenylate-binding protein 1 OS Rattus norvegicus GN Pabpc1 PE 1 SV 1
blastp_uniprot_sprot sp|P29341|PABP1_MOUSE 19 423 + 405 Gaps:43 63.52 636 64.36 1e-151 Polyadenylate-binding protein 1 OS Mus musculus GN Pabpc1 PE 1 SV 2
blastp_uniprot_sprot sp|Q5R8F7|PABP1_PONAB 19 423 + 405 Gaps:43 63.52 636 64.36 4e-151 Polyadenylate-binding protein 1 OS Pongo abelii GN PABPC1 PE 2 SV 1

28 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 310 387 78 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
ProSiteProfiles 116 193 78 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
SMART 311 383 73 SM00361 none RNA recognition motif IPR003954
SMART 208 280 73 SM00361 none RNA recognition motif IPR003954
SMART 117 189 73 SM00361 none RNA recognition motif IPR003954
SMART 29 102 74 SM00361 none RNA recognition motif IPR003954
SUPERFAMILY 306 402 97 SSF54928 none none none
SUPERFAMILY 28 197 170 SSF54928 none none none
SMART 208 280 73 SM00360 none RNA recognition motif IPR000504
SMART 117 189 73 SM00360 none RNA recognition motif IPR000504
SMART 311 383 73 SM00360 none RNA recognition motif IPR000504
SMART 29 102 74 SM00360 none RNA recognition motif IPR000504
PANTHER 311 446 136 PTHR24011 none none none
PANTHER 30 293 264 PTHR24011 none none none
TIGRFAM 29 447 419 TIGR01628 none PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family IPR006515
Gene3D 300 392 93 G3DSA:3.30.70.330 none none IPR012677
Gene3D 110 197 88 G3DSA:3.30.70.330 none none IPR012677
Gene3D 23 107 85 G3DSA:3.30.70.330 none none IPR012677
SUPERFAMILY 204 296 93 SSF54928 none none none
ProSiteProfiles 28 106 79 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
Gene3D 198 289 92 G3DSA:3.30.70.330 none none IPR012677
PANTHER 311 446 136 PTHR24011:SF258 none none none
PANTHER 30 293 264 PTHR24011:SF258 none none none
ProSiteProfiles 207 284 78 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
Pfam 118 186 69 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
Pfam 209 277 69 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
Pfam 312 380 69 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
Pfam 30 100 71 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting