Protein : Qrob_P0059040.2 Q. robur
Protein Identifier  ? Qrob_P0059040.2 Organism . Name  Quercus robur
Score  63.1 Score Type  egn
Protein Description  (M=4) PTHR21576//PTHR21576:SF21 - UNCHARACTERIZED NODULIN-LIKE PROTEIN // SUBFAMILY NOT NAMED (PTHR21576:SF21) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 587  
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0 Synonyms

0 GO Terms

13 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_014653 4 584 + 581 Gaps:3 99.32 588 78.08 0.0 Major facilitator protein
blastp_kegg lcl|rcu:RCOM_1505840 6 585 + 580 Gaps:6 99.15 589 76.71 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0012s10080g 6 584 + 579 Gaps:4 98.65 591 74.61 0.0 POPTRDRAFT_1095576 nodulin family protein
blastp_kegg lcl|pmum:103338077 3 586 + 584 Gaps:4 99.83 587 75.09 0.0 uncharacterized LOC103338077
blastp_kegg lcl|pper:PRUPE_ppa003294mg 3 586 + 584 Gaps:4 99.83 587 74.91 0.0 hypothetical protein
blastp_kegg lcl|vvi:100247479 3 585 + 583 Gaps:3 99.66 588 74.91 0.0 uncharacterized LOC100247479
blastp_kegg lcl|pxb:103950001 3 584 + 582 Gaps:7 99.66 591 73.85 0.0 probable transporter mch1
blastp_kegg lcl|cic:CICLE_v10031034mg 7 583 + 577 Gaps:4 98.14 590 75.13 0.0 hypothetical protein
blastp_kegg lcl|cit:102617653 7 583 + 577 Gaps:4 98.14 590 75.13 0.0 uncharacterized LOC102617653
blastp_kegg lcl|mdm:103454978 3 584 + 582 Gaps:7 99.66 591 73.51 0.0 probable transporter mch1
blastp_uniprot_sprot sp|P37662|YHJX_ECOLI 328 515 + 188 Gaps:15 46.02 402 30.27 4e-06 Uncharacterized MFS-type transporter YhjX OS Escherichia coli (strain K12) GN yhjX PE 1 SV 1
rpsblast_cdd gnl|CDD|115469 16 263 + 248 none 100.00 248 44.35 8e-83 pfam06813 Nodulin-like Nodulin-like. This family represents a conserved region within plant nodulin-like proteins.
rpsblast_cdd gnl|CDD|162091 330 515 + 186 Gaps:12 48.81 377 26.63 4e-13 TIGR00890 2A0111 oxalate/formate antiporter family transporter. This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient.

40 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 90 94 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 95 120 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 269 361 93 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 337 521 185 PTHR21576:SF21 none none none
PANTHER 16 306 291 PTHR21576:SF21 none none none
Phobius 429 448 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 337 521 185 PTHR21576 none none none
PANTHER 540 581 42 PTHR21576:SF21 none none none
Phobius 67 89 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 15 207 193 G3DSA:1.20.1250.20 none none none
Gene3D 349 575 227 G3DSA:1.20.1250.20 none none none
Phobius 17 37 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 212 233 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 239 268 30 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 121 149 29 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 409 428 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 454 476 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 217 295 79 SSF103473 none none IPR020846
SUPERFAMILY 544 575 32 SSF103473 none none IPR020846
SUPERFAMILY 343 515 173 SSF103473 none none IPR020846
Phobius 362 384 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 548 571 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 477 487 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 16 263 248 PF06813 none Nodulin-like IPR010658
PANTHER 16 306 291 PTHR21576 none none none
Phobius 172 176 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 449 453 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 38 66 29 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 177 200 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 16 16 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

12 Localization

Analysis Start End Length
TMHMM 549 571 22
TMHMM 362 380 18
TMHMM 177 199 22
TMHMM 17 39 22
TMHMM 67 89 22
TMHMM 485 507 22
TMHMM 450 472 22
TMHMM 98 120 22
TMHMM 424 446 22
TMHMM 395 417 22
TMHMM 211 233 22
TMHMM 243 265 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 31   Secretory pathway 4 0.654 0.075 NON-PLANT 31