Protein : Qrob_P0058240.2 Q. robur
Protein Identifier  ? Qrob_P0058240.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PTHR12742//PTHR12742:SF3 - RNA-BINDING PROTEIN // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 185  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103405208 1 105 + 105 Gaps:4 32.93 331 72.48 8e-41 U1 small nuclear ribonucleoprotein A-like
blastp_kegg lcl|cmo:103500634 1 105 + 105 Gaps:10 34.33 335 79.13 9e-39 RNA-binding protein with multiple splicing
blastp_kegg lcl|csv:101213352 1 105 + 105 Gaps:10 34.33 335 79.13 9e-39 U1 small nuclear ribonucleoprotein A-like
blastp_kegg lcl|pxb:103931737 1 105 + 105 Gaps:5 32.53 332 80.56 2e-38 U1 small nuclear ribonucleoprotein A-like
blastp_kegg lcl|pxb:103926831 1 134 + 134 Gaps:11 39.82 329 67.94 6e-37 U1 small nuclear ribonucleoprotein A-like
blastp_kegg lcl|mdm:103443231 1 134 + 134 Gaps:11 39.82 329 67.94 2e-36 U1 small nuclear ribonucleoprotein A-like
blastp_kegg lcl|fve:101298043 1 134 + 134 Gaps:10 40.12 324 66.15 4e-36 U1 small nuclear ribonucleoprotein A-like
blastp_kegg lcl|brp:103835330 1 105 + 105 Gaps:9 33.93 336 69.30 8e-36 cell wall integrity protein scw1
blastp_kegg lcl|tcc:TCM_027095 1 105 + 105 Gaps:3 32.93 328 75.93 1e-35 RNA-binding family protein
blastp_kegg lcl|vvi:100263943 1 105 + 105 Gaps:3 32.93 328 75.93 1e-35 cell wall integrity protein scw1-like
blastp_uniprot_sprot sp|Q8VC52|RBPS2_MOUSE 44 105 + 62 none 30.10 206 46.77 6e-11 RNA-binding protein with multiple splicing 2 OS Mus musculus GN Rbpms2 PE 1 SV 1
blastp_uniprot_sprot sp|Q6ZRY4|RBPS2_HUMAN 44 105 + 62 none 29.67 209 46.77 1e-10 RNA-binding protein with multiple splicing 2 OS Homo sapiens GN RBPMS2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9W6I1|RBPMS_CHICK 44 105 + 62 none 31.00 200 46.77 2e-10 RNA-binding protein with multiple splicing OS Gallus gallus GN RBPMS PE 2 SV 1
blastp_uniprot_sprot sp|Q93062|RBPMS_HUMAN 44 105 + 62 none 31.63 196 46.77 2e-10 RNA-binding protein with multiple splicing OS Homo sapiens GN RBPMS PE 1 SV 1
blastp_uniprot_sprot sp|Q9WVB0|RBPMS_MOUSE 44 105 + 62 none 31.47 197 46.77 3e-10 RNA-binding protein with multiple splicing OS Mus musculus GN Rbpms PE 2 SV 2
blastp_uniprot_sprot sp|Q9YGP5|RBPMS_XENLA 46 105 + 60 none 30.61 196 48.33 3e-10 RNA-binding protein with multiple splicing OS Xenopus laevis GN rbpms PE 2 SV 1
blastp_uniprot_sprot sp|Q01617|CPO_DROME 44 105 + 62 Gaps:5 9.08 738 46.27 3e-08 Protein couch potato OS Drosophila melanogaster GN cpo PE 2 SV 3
rpsblast_kog gnl|CDD|36670 20 105 + 86 Gaps:11 34.15 284 39.18 2e-16 KOG1457 KOG1457 KOG1457 RNA binding protein (contains RRM repeats) [General function prediction only].

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 105 105 PTHR12742:SF3 none none none
Phobius 140 184 45 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 1 105 105 PTHR12742 none none none
Phobius 1 119 119 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 19 105 87 SSF54928 none none none
Pfam 49 105 57 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
SMART 48 116 69 SM00360 none RNA recognition motif IPR000504
Phobius 120 139 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 35 105 71 G3DSA:3.30.70.330 none none IPR012677

0 Localization

0 Qtllist

0 Targeting