Protein : Qrob_P0058040.2 Q. robur
Protein Identifier  ? Qrob_P0058040.2 Organism . Name  Quercus robur
Score  8.1 Score Type  egn
Protein Description  (M=1) KOG1457//KOG1924 - RNA binding protein (contains RRM repeats) [General function prediction only]. // RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms Cytoskeleton]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 200  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_027095 13 199 + 187 Gaps:34 65.55 328 69.77 6e-76 RNA-binding family protein
blastp_kegg lcl|cit:102624190 13 199 + 187 Gaps:34 65.55 328 66.98 1e-70 cell wall integrity protein scw1-like
blastp_kegg lcl|cic:CICLE_v10026062mg 13 199 + 187 Gaps:34 65.55 328 66.98 1e-70 hypothetical protein
blastp_kegg lcl|mdm:103443231 13 199 + 187 Gaps:34 65.35 329 66.98 8e-69 U1 small nuclear ribonucleoprotein A-like
blastp_kegg lcl|pop:POPTR_0008s00980g 6 199 + 194 Gaps:38 65.86 331 60.09 4e-68 POPTRDRAFT_420917 hypothetical protein
blastp_kegg lcl|pxb:103926831 13 199 + 187 Gaps:34 65.35 329 66.05 6e-68 U1 small nuclear ribonucleoprotein A-like
blastp_kegg lcl|pop:POPTR_0010s25610g 6 199 + 194 Gaps:39 65.77 336 63.80 1e-67 POPTRDRAFT_228501 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1556280 13 199 + 187 Gaps:34 63.80 337 66.98 1e-67 RNA-binding protein with multiple splicing putative
blastp_kegg lcl|pda:103701696 13 193 + 181 Gaps:36 65.51 316 60.87 4e-67 cell wall integrity protein scw1
blastp_kegg lcl|mdm:103405208 13 199 + 187 Gaps:36 65.56 331 64.98 6e-66 U1 small nuclear ribonucleoprotein A-like
blastp_pdb 2u1a_A 115 172 + 58 Gaps:1 64.77 88 43.86 2e-06 mol:protein length:88 U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A
blastp_pdb 3pgw_P 115 172 + 58 Gaps:1 20.21 282 43.86 2e-06 mol:protein length:282 U1-A
blastp_pdb 3pgw_A 115 172 + 58 Gaps:1 20.21 282 43.86 2e-06 mol:protein length:282 U1-A
blastp_uniprot_sprot sp|O74452|SCW1_SCHPO 55 172 + 118 Gaps:12 23.17 561 30.00 2e-09 Cell wall integrity protein scw1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN scw1 PE 1 SV 1
blastp_uniprot_sprot sp|P34761|WHI3_YEAST 119 177 + 59 Gaps:10 10.14 661 43.28 5e-09 Protein WHI3 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN WHI3 PE 1 SV 1
blastp_uniprot_sprot sp|Q07655|WHI4_YEAST 119 177 + 59 Gaps:13 10.79 649 41.43 5e-08 Protein WHI4 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN WHI4 PE 1 SV 1
blastp_uniprot_sprot sp|P45429|SNRPA_XENLA 77 172 + 96 Gaps:10 30.50 282 40.70 1e-06 U1 small nuclear ribonucleoprotein A OS Xenopus laevis GN snrpa PE 2 SV 1
blastp_uniprot_sprot sp|Q62189|SNRPA_MOUSE 115 172 + 58 Gaps:1 19.86 287 43.86 7e-06 U1 small nuclear ribonucleoprotein A OS Mus musculus GN Snrpa PE 2 SV 3
blastp_uniprot_sprot sp|Q2KIR1|SNRPA_BOVIN 115 172 + 58 Gaps:1 20.21 282 43.86 8e-06 U1 small nuclear ribonucleoprotein A OS Bos taurus GN SNRPA PE 2 SV 1
blastp_uniprot_sprot sp|P09012|SNRPA_HUMAN 115 172 + 58 Gaps:1 20.21 282 43.86 8e-06 U1 small nuclear ribonucleoprotein A OS Homo sapiens GN SNRPA PE 1 SV 3
blastp_uniprot_sprot sp|Q06AA4|SNRPA_PIG 115 172 + 58 Gaps:1 20.21 282 43.86 9e-06 U1 small nuclear ribonucleoprotein A OS Sus scrofa GN SNRPA PE 2 SV 1
rpsblast_kog gnl|CDD|37135 56 110 + 55 Gaps:4 5.72 1102 60.32 5e-08 KOG1924 KOG1924 KOG1924 RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms Cytoskeleton].
rpsblast_kog gnl|CDD|36670 61 172 + 112 Gaps:17 45.42 284 24.03 6e-08 KOG1457 KOG1457 KOG1457 RNA binding protein (contains RRM repeats) [General function prediction only].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 126 199 74 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
Gene3D 117 173 57 G3DSA:3.30.70.330 none none IPR012677
Pfam 128 173 46 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
SUPERFAMILY 80 89 10 SSF54928 none none none
SUPERFAMILY 120 173 54 SSF54928 none none none
PANTHER 34 171 138 PTHR12742 none none none
PANTHER 34 171 138 PTHR12742:SF3 none none none

1 Localization

Analysis Start End Length
SignalP_EUK 1 26 25

0 Qtllist

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 28   Secretory pathway 2 0.909 0.021 NON-PLANT 28