Protein : Qrob_P0058030.2 Q. robur
Protein Identifier  ? Qrob_P0058030.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) PTHR12742//PTHR12742:SF3 - RNA-BINDING PROTEIN // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 135  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103405208 1 131 + 131 Gaps:4 40.79 331 74.81 4e-60 U1 small nuclear ribonucleoprotein A-like
blastp_kegg lcl|csv:101213352 1 131 + 131 Gaps:10 42.09 335 82.27 8e-60 U1 small nuclear ribonucleoprotein A-like
blastp_kegg lcl|cmo:103500634 1 131 + 131 Gaps:10 42.09 335 82.27 8e-60 RNA-binding protein with multiple splicing
blastp_kegg lcl|pxb:103931737 1 131 + 131 Gaps:5 40.36 332 80.60 6e-57 U1 small nuclear ribonucleoprotein A-like
blastp_kegg lcl|vvi:100263943 1 131 + 131 Gaps:3 40.85 328 80.60 7e-57 cell wall integrity protein scw1-like
blastp_kegg lcl|cic:CICLE_v10026062mg 1 131 + 131 Gaps:5 40.85 328 78.36 1e-56 hypothetical protein
blastp_kegg lcl|pxb:103926831 1 131 + 131 Gaps:4 41.03 329 77.78 3e-56 U1 small nuclear ribonucleoprotein A-like
blastp_kegg lcl|mdm:103443231 1 131 + 131 Gaps:4 41.03 329 77.78 8e-56 U1 small nuclear ribonucleoprotein A-like
blastp_kegg lcl|rcu:RCOM_1556280 1 131 + 131 Gaps:12 42.43 337 75.52 8e-56 RNA-binding protein with multiple splicing putative
blastp_kegg lcl|tcc:TCM_027095 1 131 + 131 Gaps:3 40.85 328 78.36 8e-56 RNA-binding family protein
blastp_uniprot_sprot sp|Q8VC52|RBPS2_MOUSE 44 125 + 82 none 39.81 206 45.12 8e-16 RNA-binding protein with multiple splicing 2 OS Mus musculus GN Rbpms2 PE 1 SV 1
blastp_uniprot_sprot sp|Q6ZRY4|RBPS2_HUMAN 44 125 + 82 none 39.23 209 45.12 1e-15 RNA-binding protein with multiple splicing 2 OS Homo sapiens GN RBPMS2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9W6I1|RBPMS_CHICK 44 125 + 82 none 41.00 200 45.12 2e-15 RNA-binding protein with multiple splicing OS Gallus gallus GN RBPMS PE 2 SV 1
blastp_uniprot_sprot sp|Q9YGP5|RBPMS_XENLA 46 125 + 80 none 40.82 196 46.25 3e-15 RNA-binding protein with multiple splicing OS Xenopus laevis GN rbpms PE 2 SV 1
blastp_uniprot_sprot sp|Q93062|RBPMS_HUMAN 44 125 + 82 none 41.84 196 45.12 3e-15 RNA-binding protein with multiple splicing OS Homo sapiens GN RBPMS PE 1 SV 1
blastp_uniprot_sprot sp|Q9WVB0|RBPMS_MOUSE 44 125 + 82 none 41.62 197 45.12 7e-15 RNA-binding protein with multiple splicing OS Mus musculus GN Rbpms PE 2 SV 2
blastp_uniprot_sprot sp|Q01617|CPO_DROME 44 130 + 87 Gaps:5 12.47 738 41.30 7e-12 Protein couch potato OS Drosophila melanogaster GN cpo PE 2 SV 3
rpsblast_kog gnl|CDD|36670 20 130 + 111 Gaps:11 42.96 284 40.98 9e-21 KOG1457 KOG1457 KOG1457 RNA binding protein (contains RRM repeats) [General function prediction only].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 131 131 PTHR12742:SF3 none none none
Gene3D 35 119 85 G3DSA:3.30.70.330 none none IPR012677
PANTHER 1 131 131 PTHR12742 none none none
SUPERFAMILY 19 125 107 SSF54928 none none none
Pfam 49 110 62 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504

0 Localization

0 Qtllist

0 Targeting