Protein : Qrob_P0055890.2 Q. robur
Protein Identifier  ? Qrob_P0055890.2 Organism . Name  Quercus robur
Protein Description  (M=5) K18810 - cyclin D1/2/4, plant Alias (in v1)  Qrob_P0937620.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 352  
Kegg Orthology  K18810
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0051726 regulation of cell cycle Any process that modulates the rate or extent of progression through the cell cycle.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_007246 15 350 + 336 Gaps:19 80.85 402 71.69 3e-135 Cyclin d1 1 isoform 1
blastp_kegg lcl|pop:POPTR_0009s08990g 1 349 + 349 Gaps:39 99.44 356 63.56 5e-131 POPTRDRAFT_804326 hypothetical protein
blastp_kegg lcl|vvi:100251483 3 328 + 326 Gaps:30 92.09 354 67.18 2e-128 cyclin-D4-1-like
blastp_kegg lcl|cic:CICLE_v10028735mg 2 350 + 349 Gaps:21 99.15 353 63.43 4e-128 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s29970g 5 349 + 345 Gaps:37 94.57 368 62.64 1e-126 POPTRDRAFT_550021A hypothetical protein
blastp_kegg lcl|cit:102627980 32 350 + 319 Gaps:18 90.06 352 67.19 2e-125 cyclin-D1-1-like
blastp_kegg lcl|pper:PRUPE_ppa024287mg 32 349 + 318 Gaps:27 95.77 331 68.45 1e-122 hypothetical protein
blastp_kegg lcl|gmx:100798996 54 351 + 298 Gaps:18 92.72 302 68.21 6e-121 cyclin-D4-1-like
blastp_kegg lcl|cmo:103494823 54 351 + 298 Gaps:23 87.32 347 67.99 4e-119 cyclin-D4-2-like
blastp_kegg lcl|pmum:103335125 32 319 + 288 Gaps:16 92.45 318 66.33 2e-118 cyclin-D1-1-like
blastp_pdb 2wxv_D 38 242 + 205 Gaps:31 71.70 265 34.21 4e-12 mol:protein length:265 CYCLIN-A2
blastp_pdb 2wxv_B 38 242 + 205 Gaps:31 71.70 265 34.21 4e-12 mol:protein length:265 CYCLIN-A2
blastp_pdb 2wpa_D 38 242 + 205 Gaps:31 71.70 265 34.21 4e-12 mol:protein length:265 CYCLIN A2
blastp_pdb 2wpa_B 38 242 + 205 Gaps:31 71.70 265 34.21 4e-12 mol:protein length:265 CYCLIN A2
blastp_pdb 2wip_D 38 242 + 205 Gaps:31 71.70 265 34.21 4e-12 mol:protein length:265 CYCLIN-A2
blastp_pdb 2wip_B 38 242 + 205 Gaps:31 71.70 265 34.21 4e-12 mol:protein length:265 CYCLIN-A2
blastp_pdb 2wih_D 38 242 + 205 Gaps:31 71.70 265 34.21 4e-12 mol:protein length:265 CYCLIN-A2
blastp_pdb 2wih_B 38 242 + 205 Gaps:31 71.70 265 34.21 4e-12 mol:protein length:265 CYCLIN-A2
blastp_pdb 2c4g_D 38 242 + 205 Gaps:31 71.70 265 34.21 4e-12 mol:protein length:265 CYCLIN A2
blastp_pdb 2c4g_B 38 242 + 205 Gaps:31 71.70 265 34.21 4e-12 mol:protein length:265 CYCLIN A2
blastp_uniprot_sprot sp|P42751|CCD11_ARATH 1 281 + 281 Gaps:26 80.53 339 45.79 3e-66 Cyclin-D1-1 OS Arabidopsis thaliana GN CYCD1-1 PE 1 SV 3
blastp_uniprot_sprot sp|Q6YXH8|CCD41_ORYSJ 9 310 + 302 Gaps:34 87.08 356 43.23 2e-61 Cyclin-D4-1 OS Oryza sativa subsp. japonica GN CYCD4-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q0J233|CCD21_ORYSJ 10 280 + 271 Gaps:31 84.42 308 47.31 6e-60 Cyclin-D2-1 OS Oryza sativa subsp. japonica GN CYCD2-1 PE 3 SV 2
blastp_uniprot_sprot sp|Q8LHA8|CCD22_ORYSJ 48 308 + 261 Gaps:24 71.63 356 43.92 6e-55 Cyclin-D2-2 OS Oryza sativa subsp. japonica GN CYCD2-2 PE 2 SV 1
blastp_uniprot_sprot sp|Q69QB8|CCD31_ORYSJ 9 312 + 304 Gaps:29 89.77 342 42.35 1e-54 Cyclin-D3-1 OS Oryza sativa subsp. japonica GN CYCD3-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q8H339|CCD12_ORYSJ 59 279 + 221 Gaps:12 62.99 354 47.09 7e-54 Cyclin-D1-2 OS Oryza sativa subsp. japonica GN CYCD1-2 PE 3 SV 2
blastp_uniprot_sprot sp|Q8LGA1|CCD41_ARATH 54 310 + 257 Gaps:26 79.55 308 43.67 1e-53 Cyclin-D4-1 OS Arabidopsis thaliana GN CYCD4-1 PE 1 SV 2
blastp_uniprot_sprot sp|P42752|CCD21_ARATH 54 308 + 255 Gaps:22 71.19 361 42.02 5e-52 Cyclin-D2-1 OS Arabidopsis thaliana GN CYCD2-1 PE 1 SV 3
blastp_uniprot_sprot sp|Q0WQN9|CCD42_ARATH 54 276 + 223 Gaps:9 73.83 298 44.09 1e-49 Cyclin-D4-2 OS Arabidopsis thaliana GN CYCD4-2 PE 1 SV 2
blastp_uniprot_sprot sp|Q10K98|CCD23_ORYSJ 12 277 + 266 Gaps:28 69.63 405 37.59 2e-49 Putative cyclin-D2-3 OS Oryza sativa subsp. japonica GN CYCD2-3 PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 67 179 113 G3DSA:1.10.472.10 none none IPR013763
SUPERFAMILY 56 185 130 SSF47954 none none IPR013763
Pfam 188 280 93 PF02984 none Cyclin, C-terminal domain IPR004367
SMART 89 179 91 SM00385 none domain present in cyclins, TFIIB and Retinoblastoma IPR013763
PANTHER 6 281 276 PTHR10177:SF191 none none IPR031093
Pfam 57 185 129 PF00134 none Cyclin, N-terminal domain IPR006671
Gene3D 180 247 68 G3DSA:1.10.472.10 none none IPR013763
ProSitePatterns 84 115 32 PS00292 none Cyclins signature. IPR006671
PANTHER 6 281 276 PTHR10177 none none none
SUPERFAMILY 170 279 110 SSF47954 none none IPR013763

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting