Protein : Qrob_P0055600.2 Q. robur
Protein Identifier  ? Qrob_P0055600.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG1960 - Predicted RNA-binding protein contains KH domains [RNA processing and modification]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 730  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103955700 4 667 + 664 Gaps:22 90.15 589 75.89 0.0 protein RIK-like
blastp_kegg lcl|pxb:103955748 4 667 + 664 Gaps:22 90.15 589 75.89 0.0 protein RIK-like
blastp_kegg lcl|pmum:103330104 4 690 + 687 Gaps:41 94.27 593 74.96 0.0 protein RIK
blastp_kegg lcl|pper:PRUPE_ppa004810mg 4 474 + 471 Gaps:27 94.69 490 73.71 0.0 hypothetical protein
blastp_kegg lcl|fve:101295253 4 667 + 664 Gaps:29 90.66 589 73.22 0.0 protein RIK-like
blastp_kegg lcl|vvi:100265165 4 474 + 471 Gaps:32 78.98 566 76.06 0.0 protein RIK-like
blastp_kegg lcl|tcc:TCM_018761 4 670 + 667 Gaps:53 89.93 606 69.54 0.0 RIK putative
blastp_kegg lcl|pop:POPTR_0017s12910g 3 689 + 687 Gaps:24 91.04 614 69.05 0.0 POPTRDRAFT_577747 hypothetical protein
blastp_kegg lcl|cam:101501753 4 670 + 667 Gaps:63 91.92 656 62.69 0.0 protein RIK-like
blastp_kegg lcl|gmx:100798576 4 670 + 667 Gaps:50 90.67 643 65.35 0.0 protein RIK-like
blastp_pdb 2yqr_A 198 302 + 105 Gaps:4 86.55 119 42.72 1e-16 mol:protein length:119 KIAA0907 protein
blastp_uniprot_sprot sp|Q9LIA4|RIK_ARATH 3 473 + 471 Gaps:52 73.53 578 61.65 5e-145 Protein RIK OS Arabidopsis thaliana GN RIK PE 1 SV 2
blastp_uniprot_sprot sp|Q32SG5|RIK_MAIZE 4 473 + 470 Gaps:30 73.70 616 56.39 7e-132 Protein RIK OS Zea mays PE 1 SV 1
blastp_uniprot_sprot sp|Q3TCX3|K0907_MOUSE 3 302 + 300 Gaps:56 53.27 612 31.60 3e-28 UPF0469 protein KIAA0907 OS Mus musculus GN Kiaa0907 PE 2 SV 1
blastp_uniprot_sprot sp|Q7Z7F0|K0907_HUMAN 80 311 + 232 Gaps:44 41.37 614 34.65 5e-28 UPF0469 protein KIAA0907 OS Homo sapiens GN KIAA0907 PE 1 SV 1
blastp_uniprot_sprot sp|Q5ZL54|K0907_CHICK 80 300 + 221 Gaps:40 38.61 619 34.73 8e-28 UPF0469 protein KIAA0907 homolog OS Gallus gallus GN RCJMB04_7l9 PE 2 SV 1
blastp_uniprot_sprot sp|Q2NLB0|K0907_XENLA 80 313 + 234 Gaps:39 43.93 585 32.68 1e-27 UPF0469 protein KIAA0907 homolog OS Xenopus laevis PE 2 SV 1
blastp_uniprot_sprot sp|A0JM64|K0907_XENTR 80 284 + 205 Gaps:34 36.44 612 34.98 2e-27 UPF0469 protein KIAA0907 homolog OS Xenopus tropicalis PE 2 SV 1
blastp_uniprot_sprot sp|Q6NZ18|K0907_DANRE 80 284 + 205 Gaps:37 39.30 570 33.48 9e-27 UPF0469 protein KIAA0907 homolog OS Danio rerio PE 2 SV 1
blastp_uniprot_sprot sp|Q09911|YAJE_SCHPO 73 358 + 286 Gaps:51 53.75 534 27.53 2e-15 Uncharacterized protein C30D11.14c OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPAC30D11.14c PE 4 SV 1
rpsblast_kog gnl|CDD|37171 77 446 + 370 Gaps:47 69.11 531 19.07 1e-19 KOG1960 KOG1960 KOG1960 Predicted RNA-binding protein contains KH domains [RNA processing and modification].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 66 408 343 PTHR15744:SF0 none none IPR031121
Phobius 46 729 684 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 203 281 79 G3DSA:3.30.1370.10 none none IPR004088
Gene3D 107 190 84 G3DSA:3.30.1370.10 none none IPR004088
Phobius 1 13 13 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 28 45 18 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 45 45 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 66 408 343 PTHR15744 none none none
SUPERFAMILY 197 284 88 SSF54791 none none IPR004088
Phobius 14 27 14 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none

1 Localization

Analysis Start End Length
TMHMM 13 35 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5

0 Targeting