Protein : Qrob_P0055490.2 Q. robur
Protein Identifier  ? Qrob_P0055490.2 Organism . Name  Quercus robur
Score  96.0 Score Type  egn
Protein Description  (M=2) KOG0116//KOG2104 - RasGAP SH3 binding protein rasputin contains NTF2 and RRM domains [Signal transduction mechanisms]. // Nuclear transport factor 2 [Intracellular trafficking secretion and vesicular transport]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 401  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa005348mg 1 361 + 361 Gaps:9 79.57 465 65.41 8e-161 hypothetical protein
blastp_kegg lcl|pmum:103330115 1 361 + 361 Gaps:9 79.57 465 64.59 2e-158 ras GTPase-activating protein-binding protein 2-like
blastp_kegg lcl|tcc:TCM_018776 1 364 + 364 Gaps:10 81.32 455 65.95 7e-153 Nuclear transport factor 2 family protein with RNA binding domain isoform 1
blastp_kegg lcl|pxb:103955742 1 400 + 400 Gaps:15 86.80 462 63.59 2e-147 ras GTPase-activating protein-binding protein 2-like
blastp_kegg lcl|pxb:103955707 1 397 + 397 Gaps:15 86.15 462 63.82 3e-147 ras GTPase-activating protein-binding protein 2-like
blastp_kegg lcl|mdm:103442430 1 398 + 398 Gaps:15 86.74 460 61.40 2e-143 ras GTPase-activating protein-binding protein 2-like
blastp_kegg lcl|fve:101296796 1 400 + 400 Gaps:51 88.04 510 57.46 3e-141 putative G3BP-like protein-like
blastp_kegg lcl|rcu:RCOM_1025530 1 397 + 397 Gaps:15 86.15 462 63.57 2e-139 Ras-GTPase-activating protein-binding protein putative
blastp_kegg lcl|mdm:103421521 1 397 + 397 Gaps:15 86.52 460 60.05 1e-138 ras GTPase-activating protein-binding protein 2-like
blastp_kegg lcl|gmx:100805494 1 354 + 354 Gaps:17 74.95 487 61.64 1e-133 ras GTPase-activating protein-binding protein 2-like
blastp_pdb 3q90_B 4 73 + 70 Gaps:3 52.14 140 36.99 9e-10 mol:protein length:140 Ras GTPase-activating protein-binding protein
blastp_pdb 3q90_A 4 73 + 70 Gaps:3 52.14 140 36.99 9e-10 mol:protein length:140 Ras GTPase-activating protein-binding protein
blastp_pdb 3ujm_B 4 73 + 70 Gaps:1 59.17 120 43.66 2e-09 mol:protein length:120 Rasputin
blastp_pdb 3ujm_A 4 73 + 70 Gaps:1 59.17 120 43.66 2e-09 mol:protein length:120 Rasputin
blastp_pdb 1gyb_D 4 72 + 69 Gaps:2 56.80 125 39.44 7e-07 mol:protein length:125 NUCLEAR TRANSPORT FACTOR 2
blastp_pdb 1gyb_C 4 72 + 69 Gaps:2 56.80 125 39.44 7e-07 mol:protein length:125 NUCLEAR TRANSPORT FACTOR 2
blastp_pdb 1gyb_B 4 72 + 69 Gaps:2 56.80 125 39.44 7e-07 mol:protein length:125 NUCLEAR TRANSPORT FACTOR 2
blastp_pdb 1gyb_A 4 72 + 69 Gaps:2 56.80 125 39.44 7e-07 mol:protein length:125 NUCLEAR TRANSPORT FACTOR 2
blastp_pdb 1gy7_D 4 72 + 69 Gaps:2 56.80 125 39.44 7e-07 mol:protein length:125 NUCLEAR TRANSPORT FACTOR 2
blastp_pdb 1gy7_C 4 72 + 69 Gaps:2 56.80 125 39.44 7e-07 mol:protein length:125 NUCLEAR TRANSPORT FACTOR 2
blastp_uniprot_sprot sp|O94260|G3BP_SCHPO 4 366 + 363 Gaps:56 83.18 434 27.42 2e-16 Putative G3BP-like protein OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN nxt3 PE 1 SV 1
blastp_uniprot_sprot sp|Q13283|G3BP1_HUMAN 4 76 + 73 Gaps:3 16.31 466 35.53 5e-09 Ras GTPase-activating protein-binding protein 1 OS Homo sapiens GN G3BP1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5RB87|G3BP1_PONAB 4 73 + 70 Gaps:3 15.67 466 36.99 5e-09 Ras GTPase-activating protein-binding protein 1 OS Pongo abelii GN G3BP1 PE 2 SV 1
blastp_uniprot_sprot sp|P97855|G3BP1_MOUSE 4 76 + 73 Gaps:3 16.34 465 35.53 6e-09 Ras GTPase-activating protein-binding protein 1 OS Mus musculus GN G3bp1 PE 1 SV 1
blastp_uniprot_sprot sp|Q32LC7|G3BP1_BOVIN 4 73 + 70 Gaps:3 15.70 465 36.99 6e-09 Ras GTPase-activating protein-binding protein 1 OS Bos taurus GN G3BP PE 2 SV 1
blastp_uniprot_sprot sp|Q75AA5|NTF2_ASHGO 4 72 + 69 Gaps:2 56.80 125 40.85 2e-07 Nuclear transport factor 2 OS Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN NTF2 PE 3 SV 1
blastp_uniprot_sprot sp|P33331|NTF2_YEAST 4 72 + 69 Gaps:2 56.80 125 39.44 7e-07 Nuclear transport factor 2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN NTF2 PE 1 SV 2
blastp_uniprot_sprot sp|Q6FRC6|NTF2_CANGA 4 72 + 69 Gaps:2 56.80 125 40.85 1e-06 Nuclear transport factor 2 OS Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN NTF2 PE 3 SV 1
blastp_uniprot_sprot sp|Q8NJ52|NTF2_DAVTA 7 74 + 68 Gaps:2 56.00 125 38.57 6e-06 Nuclear transport factor 2 OS Davidiella tassiana GN NTF2 PE 1 SV 1
blastp_uniprot_sprot sp|Q6CQX4|NTF2_KLULA 4 72 + 69 Gaps:2 56.80 125 38.03 6e-06 Nuclear transport factor 2 OS Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN NTF2 PE 3 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 220 274 55 G3DSA:3.30.70.330 none none IPR012677
Pfam 3 73 71 PF02136 none Nuclear transport factor 2 (NTF2) domain IPR002075
PANTHER 4 397 394 PTHR10693:SF20 none none none
SUPERFAMILY 220 322 103 SSF54928 none none none
ProSiteProfiles 1 73 73 PS50177 none Nuclear transport factor 2 domain profile. IPR018222
SUPERFAMILY 3 74 72 SSF54427 none none none
PANTHER 4 397 394 PTHR10693 none none none
Pfam 240 265 26 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
Gene3D 3 76 74 G3DSA:3.10.450.50 none none none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting