Protein : Qrob_P0053520.2 Q. robur
Protein Identifier  ? Qrob_P0053520.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=20) PTHR12663:SF3 - gb def: precocious dissociation of sister chromatids, pds5p [saccharomyces cerevisiae] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 352  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10024823mg 16 293 + 278 Gaps:7 33.54 826 55.96 6e-88 hypothetical protein
blastp_kegg lcl|cit:102614026 16 293 + 278 Gaps:7 29.85 928 55.60 3e-87 muscle M-line assembly protein unc-89-like
blastp_kegg lcl|rcu:RCOM_0470870 16 238 + 223 Gaps:1 35.28 635 60.27 6e-83 hypothetical protein
blastp_kegg lcl|cmo:103500024 25 250 + 226 Gaps:2 84.44 270 56.58 3e-77 sister chromatid cohesion protein PDS5 homolog B-B-like
blastp_kegg lcl|tcc:TCM_027420 1 228 + 228 Gaps:8 27.11 819 66.22 4e-77 Chloroplast-like protein isoform 1
blastp_kegg lcl|gmx:100790092 14 227 + 214 Gaps:1 23.45 917 57.21 2e-76 dentin sialophosphoprotein-like
blastp_kegg lcl|pop:POPTR_0006s27920g 14 238 + 225 Gaps:1 32.15 703 54.42 2e-76 hypothetical protein
blastp_kegg lcl|fve:101296742 14 227 + 214 Gaps:1 22.37 961 59.53 3e-76 uncharacterized protein LOC101296742
blastp_kegg lcl|csv:101213167 12 238 + 227 Gaps:1 27.80 820 56.14 4e-75 uncharacterized LOC101213167
blastp_kegg lcl|pper:PRUPE_ppa001087mg 14 238 + 225 Gaps:1 24.78 912 55.31 8e-75 hypothetical protein
blastp_uniprot_sprot sp|Q9HFF5|PDS5_SCHPO 61 208 + 148 Gaps:2 12.45 1205 27.33 5e-10 Sister chromatid cohesion protein pds5 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN pds5 PE 1 SV 1
blastp_uniprot_sprot sp|A1L1F4|PDS5A_DANRE 76 239 + 164 Gaps:3 12.65 1320 22.75 8e-10 Sister chromatid cohesion protein PDS5 homolog A OS Danio rerio GN pds5a PE 2 SV 1
blastp_uniprot_sprot sp|Q29RF7|PDS5A_HUMAN 65 239 + 175 Gaps:3 13.31 1337 23.03 1e-09 Sister chromatid cohesion protein PDS5 homolog A OS Homo sapiens GN PDS5A PE 1 SV 1
blastp_uniprot_sprot sp|Q6A026|PDS5A_MOUSE 65 239 + 175 Gaps:3 13.36 1332 23.03 2e-09 Sister chromatid cohesion protein PDS5 homolog A OS Mus musculus GN Pds5a PE 3 SV 3
blastp_uniprot_sprot sp|A4L9P7|PDS5A_RAT 65 239 + 175 Gaps:3 13.35 1333 23.03 2e-09 Sister chromatid cohesion protein PDS5 homolog A OS Rattus norvegicus GN Pds5a PE 2 SV 1
blastp_uniprot_sprot sp|Q5F3V3|PDS5A_CHICK 17 239 + 223 Gaps:9 16.54 1330 21.82 4e-09 Sister chromatid cohesion protein PDS5 homolog A OS Gallus gallus GN PDS5A PE 2 SV 2
blastp_uniprot_sprot sp|Q4KLU7|PD5AB_XENLA 65 239 + 175 Gaps:3 13.45 1323 22.47 1e-08 Sister chromatid cohesion protein PDS5 homolog A-B OS Xenopus laevis GN pds5a-b PE 1 SV 1
blastp_uniprot_sprot sp|Q4QXM3|PD5AA_XENLA 65 239 + 175 Gaps:3 13.45 1323 22.47 2e-08 Sister chromatid cohesion protein PDS5 homolog A-A OS Xenopus laevis GN pds5a-a PE 1 SV 1
blastp_uniprot_sprot sp|Q04264|PDS5_YEAST 71 217 + 147 Gaps:3 11.59 1277 24.32 8e-08 Sister chromatid cohesion protein PDS5 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN PDS5 PE 1 SV 1
rpsblast_kog gnl|CDD|36738 18 235 + 218 Gaps:25 35.23 1266 30.04 3e-29 KOG1525 KOG1525 KOG1525 Sister chromatid cohesion complex Cohesin subunit PDS5 [Cell cycle control cell division chromosome partitioning].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 3 238 236 PTHR12663 none none none
Coils 35 56 22 Coil none none none
SUPERFAMILY 58 233 176 SSF48371 none none IPR016024
PANTHER 3 238 236 PTHR12663:SF3 none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5

0 Targeting