Protein : Qrob_P0053280.2 Q. robur
Protein Identifier  ? Qrob_P0053280.2 Organism . Name  Quercus robur
Score  41.2 Score Type  egn
Protein Description  (M=18) K04567 - lysyl-tRNA synthetase, class II [EC:6.1.1.6] Code Enzyme  EC:6.1.1.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1142  
Kegg Orthology  K04567
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0 Synonyms

8 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0004824 lysine-tRNA ligase activity Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys).
GO:0006430 lysyl-tRNA aminoacylation The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_019889 1 1118 + 1118 Gaps:69 81.89 613 82.27 0.0 Lysyl-tRNA synthetase 1 isoform 1
blastp_kegg lcl|vvi:100262532 1 1128 + 1128 Gaps:69 82.71 619 81.64 0.0 lysyl-tRNA synthetase-like
blastp_kegg lcl|pop:POPTR_0018s09760g 1 1120 + 1120 Gaps:71 84.28 598 81.15 0.0 POPTRDRAFT_262154 hypothetical protein
blastp_kegg lcl|vvi:100242505 1 1117 + 1117 Gaps:66 81.29 620 81.75 0.0 lysyl-tRNA synthetase-like
blastp_kegg lcl|csv:101229946 158 1117 + 960 Gaps:57 98.07 363 84.27 0.0 lysine--tRNA ligase-like
blastp_kegg lcl|cmo:103492812 1 1117 + 1117 Gaps:66 73.15 689 81.55 0.0 lysine--tRNA ligase
blastp_kegg lcl|pop:POPTR_0006s17970g 1 1120 + 1120 Gaps:67 83.91 603 80.04 0.0 Lysyl-tRNA synthetase family protein
blastp_kegg lcl|sly:101251001 1 1131 + 1131 Gaps:72 85.29 605 75.39 0.0 lysine--tRNA ligase-like
blastp_kegg lcl|pmum:103323536 1 1123 + 1123 Gaps:72 83.44 616 78.40 0.0 lysine--tRNA ligase
blastp_kegg lcl|csv:101204394 1 1117 + 1117 Gaps:66 72.83 692 79.96 0.0 lysine--tRNA ligase-like
blastp_pdb 3bju_D 1 1114 + 1114 Gaps:87 91.36 521 60.29 3e-149 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_C 1 1114 + 1114 Gaps:87 91.36 521 60.29 3e-149 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_B 1 1114 + 1114 Gaps:87 91.36 521 60.29 3e-149 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_A 1 1114 + 1114 Gaps:87 91.36 521 60.29 3e-149 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3e9i_D 1 1109 + 1109 Gaps:141 95.13 493 43.50 7e-91 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_C 1 1109 + 1109 Gaps:141 95.13 493 43.50 7e-91 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_B 1 1109 + 1109 Gaps:141 95.13 493 43.50 7e-91 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_A 1 1109 + 1109 Gaps:141 95.13 493 43.50 7e-91 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9h_D 1 1109 + 1109 Gaps:141 95.13 493 43.50 7e-91 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9h_C 1 1109 + 1109 Gaps:141 95.13 493 43.50 7e-91 mol:protein length:493 Lysyl-tRNA synthetase
blastp_uniprot_sprot sp|Q6F2U9|SYK_ORYSJ 1 1113 + 1113 Gaps:81 82.06 602 75.71 0.0 Lysine--tRNA ligase OS Oryza sativa subsp. japonica GN Os03g0586800 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZPI1|SYK_ARATH 1 1125 + 1125 Gaps:70 80.99 626 75.94 0.0 Lysine--tRNA ligase OS Arabidopsis thaliana GN At3g11710 PE 2 SV 1
blastp_uniprot_sprot sp|Q43776|SYK_SOLLC 1 1112 + 1112 Gaps:64 85.88 588 65.54 4e-165 Lysine--tRNA ligase OS Solanum lycopersicum GN LYSRS PE 2 SV 1
blastp_uniprot_sprot sp|Q99MN1|SYK_MOUSE 1 1127 + 1127 Gaps:87 82.18 595 60.33 1e-151 Lysine--tRNA ligase OS Mus musculus GN Kars PE 1 SV 1
blastp_uniprot_sprot sp|P37879|SYK_CRIGR 1 1128 + 1128 Gaps:87 82.08 597 59.80 1e-150 Lysine--tRNA ligase OS Cricetulus griseus GN KARS PE 1 SV 1
blastp_uniprot_sprot sp|Q15046|SYK_HUMAN 1 1128 + 1128 Gaps:87 82.08 597 58.98 3e-149 Lysine--tRNA ligase OS Homo sapiens GN KARS PE 1 SV 3
blastp_uniprot_sprot sp|Q9UUE6|SYKC_SCHPO 1 1121 + 1121 Gaps:125 82.23 591 58.44 9e-138 Lysine--tRNA ligase cytoplasmic OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN krs1 PE 3 SV 1
blastp_uniprot_sprot sp|Q22099|SYK_CAEEL 17 1113 + 1097 Gaps:102 80.42 572 56.09 3e-133 Lysine--tRNA ligase OS Caenorhabditis elegans GN krs-1 PE 3 SV 1
blastp_uniprot_sprot sp|P15180|SYKC_YEAST 1 1111 + 1111 Gaps:109 80.88 591 55.44 6e-129 Lysine--tRNA ligase cytoplasmic OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN KRS1 PE 1 SV 2
blastp_uniprot_sprot sp|C4V8R9|SYKC_NOSCE 17 1114 + 1098 Gaps:107 88.72 514 53.07 4e-126 Probable lysine--tRNA ligase cytoplasmic OS Nosema ceranae (strain BRL01) GN NCER_100909 PE 3 SV 1

23 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 178 393 216 PS50862 "Reactome:REACT_71" Aminoacyl-transfer RNA synthetases class-II family profile. IPR006195
PANTHER 929 1117 189 PTHR22594 "Reactome:REACT_71";signature_desc=ASPARTYL/LYSYL-TRNA SYNTHETASE none IPR018150
PANTHER 1 326 326 PTHR22594 "Reactome:REACT_71";signature_desc=ASPARTYL/LYSYL-TRNA SYNTHETASE none IPR018150
SUPERFAMILY 2 113 112 SSF50249 none none IPR012340
SUPERFAMILY 156 364 209 SSF55681 none none none
Gene3D 2 113 112 G3DSA:2.40.50.140 none none IPR012340
ProSiteProfiles 788 1111 324 PS50862 "Reactome:REACT_71" Aminoacyl-transfer RNA synthetases class-II family profile. IPR006195
SUPERFAMILY 377 735 359 SSF55681 none none none
Pfam 376 735 360 PF00152 "Reactome:REACT_71" tRNA synthetases class II (D, K and N) IPR004364
Pfam 157 340 184 PF00152 "Reactome:REACT_71" tRNA synthetases class II (D, K and N) IPR004364
Pfam 768 1110 343 PF00152 "Reactome:REACT_71" tRNA synthetases class II (D, K and N) IPR004364
PRINTS 846 859 14 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 803 813 11 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 819 835 17 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 994 1010 17 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
Gene3D 765 1108 344 G3DSA:3.30.930.10 none none none
Gene3D 374 735 362 G3DSA:3.30.930.10 none none none
Gene3D 156 352 197 G3DSA:3.30.930.10 none none none
ProSiteProfiles 397 739 343 PS50862 "Reactome:REACT_71" Aminoacyl-transfer RNA synthetases class-II family profile. IPR006195
PANTHER 929 1117 189 PTHR22594:SF4 none none none
PANTHER 1 326 326 PTHR22594:SF4 none none none
Pfam 24 100 77 PF01336 none OB-fold nucleic acid binding domain IPR004365
SUPERFAMILY 767 1110 344 SSF55681 none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5

0 Targeting