Protein : Qrob_P0050840.2 Q. robur
Protein Identifier  ? Qrob_P0050840.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0113//KOG0116//KOG0117//KOG0127//KOG0144//KOG0147//KOG0148//KOG0149//KOG4205//KOG4207 - U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]. // RasGAP SH3 binding protein rasputin contains NTF2 and RRM domains [Signal transduction mechanisms]. // Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]. // Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]. // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]. // Transcriptional coactivator CAPER (RRM superfamily) [Transcription]. // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification Translation ribosomal structure and biogenesis]. // Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]. // RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex subunit HRP1 [RNA processing and modification]. // Predicted splicing factor SR protein superfamily [RNA processing and modification]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 283  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

49 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0019s09640g 1 282 + 282 Gaps:13 100.00 271 87.45 2e-159 hypothetical protein
blastp_kegg lcl|tcc:TCM_036007 1 279 + 279 Gaps:30 81.10 344 85.66 2e-155 RNA-binding family protein isoform 1
blastp_kegg lcl|pmum:103336535 1 282 + 282 Gaps:16 100.00 288 85.76 3e-151 RNA-binding protein 38-like
blastp_kegg lcl|pop:POPTR_0013s09120g 1 269 + 269 Gaps:13 96.99 266 86.82 1e-150 POPTRDRAFT_1097401 hypothetical protein
blastp_kegg lcl|vvi:100241327 1 269 + 269 Gaps:15 96.97 264 91.02 2e-150 RNA-binding protein 38-like
blastp_kegg lcl|pvu:PHAVU_011G003400g 1 282 + 282 Gaps:13 100.00 273 86.81 5e-149 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1602840 1 269 + 269 Gaps:18 96.91 259 88.05 7e-148 RNA-binding region-containing protein putative
blastp_kegg lcl|cam:101507531 1 282 + 282 Gaps:10 100.00 272 86.76 2e-140 RNA-binding protein Musashi homolog Rbp6-like
blastp_kegg lcl|cic:CICLE_v10021520mg 10 282 + 273 Gaps:18 94.39 285 82.53 2e-135 hypothetical protein
blastp_kegg lcl|sot:102584957 1 282 + 282 Gaps:22 100.00 264 80.30 1e-132 RNA-binding protein 24-A-like
blastp_pdb 2cqd_A 12 106 + 95 Gaps:3 79.31 116 59.78 5e-30 mol:protein length:116 RNA-binding region containing protein 1
blastp_pdb 2dh8_A 17 104 + 88 Gaps:10 74.29 105 42.31 1e-16 mol:protein length:105 DAZ-associated protein 1
blastp_pdb 1hd1_A 17 86 + 70 Gaps:5 100.00 75 41.33 2e-14 mol:protein length:75 PROTEIN (HETEROGENEOUS NUCLEAR RIBONUCLEOPROT
blastp_pdb 1hd0_A 17 86 + 70 Gaps:5 100.00 75 41.33 2e-14 mol:protein length:75 PROTEIN (HETEROGENEOUS NUCLEAR RIBONUCLEOPROT
blastp_pdb 3s7r_B 17 84 + 68 none 78.16 87 39.71 3e-14 mol:protein length:87 Heterogeneous nuclear ribonucleoprotein A/B
blastp_pdb 3s7r_A 17 84 + 68 none 78.16 87 39.71 3e-14 mol:protein length:87 Heterogeneous nuclear ribonucleoprotein A/B
blastp_pdb 1uaw_A 17 66 + 50 none 64.94 77 52.00 2e-13 mol:protein length:77 mouse-musashi-1
blastp_pdb 2rs2_A 16 91 + 76 none 69.72 109 36.84 6e-13 mol:protein length:109 RNA-binding protein Musashi homolog 1
blastp_pdb 1x4b_A 15 84 + 70 Gaps:10 60.34 116 48.57 7e-13 mol:protein length:116 Heterogeneous nuclear ribonucleoproteins A2/B
blastp_pdb 2mst_A 17 91 + 75 none 100.00 75 40.00 8e-13 mol:protein length:75 PROTEIN (MUSASHI1)
blastp_uniprot_sprot sp|Q5ZJX4|RBM38_CHICK 12 195 + 184 Gaps:21 79.53 215 49.12 2e-30 RNA-binding protein 38 OS Gallus gallus GN RBM38 PE 2 SV 1
blastp_uniprot_sprot sp|Q76LC6|RBM24_DANRE 12 96 + 85 none 36.96 230 63.53 5e-30 RNA-binding protein 24 OS Danio rerio GN rbm24 PE 2 SV 1
blastp_uniprot_sprot sp|Q6DIV4|RBM38_XENTR 12 193 + 182 Gaps:19 77.17 219 47.93 9e-30 RNA-binding protein 38 OS Xenopus tropicalis GN rbm38 PE 2 SV 1
blastp_uniprot_sprot sp|Q9H0Z9|RBM38_HUMAN 3 106 + 104 Gaps:3 42.26 239 56.44 1e-29 RNA-binding protein 38 OS Homo sapiens GN RBM38 PE 1 SV 2
blastp_uniprot_sprot sp|Q9I8B3|RB24B_XENLA 12 96 + 85 none 37.95 224 62.35 2e-29 RNA-binding protein 24-B OS Xenopus laevis GN rbm24-b PE 2 SV 1
blastp_uniprot_sprot sp|Q9BX46|RBM24_HUMAN 12 96 + 85 none 36.02 236 63.53 2e-29 RNA-binding protein 24 OS Homo sapiens GN RBM24 PE 1 SV 1
blastp_uniprot_sprot sp|Q6GQD3|RB24A_XENLA 12 96 + 85 none 37.78 225 62.35 2e-29 RNA-binding protein 24-A OS Xenopus laevis GN rbm24-a PE 2 SV 1
blastp_uniprot_sprot sp|Q6P8A7|RBM24_XENTR 12 96 + 85 none 37.61 226 62.35 2e-29 RNA-binding protein 24 OS Xenopus tropicalis GN rbm24 PE 2 SV 1
blastp_uniprot_sprot sp|Q7T3I7|RBM38_XENLA 12 193 + 182 Gaps:19 78.97 214 47.34 2e-29 RNA-binding protein 38 OS Xenopus laevis GN rbm38 PE 1 SV 2
blastp_uniprot_sprot sp|Q5ZMA3|RBM24_CHICK 12 94 + 83 none 36.89 225 63.86 4e-29 RNA-binding protein 24 OS Gallus gallus GN RBM24 PE 2 SV 2

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 17 89 73 SM00360 none RNA recognition motif IPR000504
PANTHER 9 185 177 PTHR24011:SF218 none none none
ProSiteProfiles 16 100 85 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
Gene3D 13 114 102 G3DSA:3.30.70.330 none none IPR012677
PANTHER 9 185 177 PTHR24011 none none none
Pfam 18 73 56 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
SUPERFAMILY 12 119 108 SSF54928 none none none

0 Localization

0 Qtllist

0 Targeting