Protein : Qrob_P0050180.2 Q. robur
Protein Identifier  ? Qrob_P0050180.2 Organism . Name  Quercus robur
Score  33.2 Score Type  egn
Protein Description  (M=1) KOG0379//KOG1356 - Kelch repeat-containing proteins [General function prediction only]. // Putative transcription factor 5qNCA contains JmjC domain [Transcription]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 477  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103965327 111 291 + 181 Gaps:19 29.76 672 68.50 4e-87 acyl-CoA-binding domain-containing protein 4-like
blastp_kegg lcl|cit:102607331 112 306 + 195 Gaps:22 31.26 675 69.19 2e-86 acyl-CoA-binding domain-containing protein 4-like
blastp_kegg lcl|mdm:103433931 111 291 + 181 Gaps:19 29.81 671 68.00 9e-86 acyl-CoA-binding domain-containing protein 4
blastp_kegg lcl|vvi:100240812 111 311 + 201 Gaps:22 32.15 675 66.82 5e-84 acyl-CoA-binding domain-containing protein 4-like
blastp_kegg lcl|pper:PRUPE_ppa002406mg 111 291 + 181 Gaps:19 29.63 675 68.50 8e-84 hypothetical protein
blastp_kegg lcl|pmum:103344580 111 291 + 181 Gaps:19 29.63 675 68.50 1e-83 acyl-CoA-binding domain-containing protein 4
blastp_kegg lcl|mdm:103450926 111 291 + 181 Gaps:19 29.76 672 67.00 7e-83 acyl-CoA-binding domain-containing protein 4
blastp_kegg lcl|gmx:100813240 111 306 + 196 Gaps:27 31.46 658 69.08 9e-83 acyl-CoA-binding domain-containing protein 4-like
blastp_kegg lcl|tcc:TCM_026635 112 311 + 200 Gaps:22 31.95 676 65.74 1e-82 Acyl-CoA binding protein 4 isoform 1
blastp_kegg lcl|cam:101501039 111 311 + 201 Gaps:27 31.78 667 67.45 2e-82 acyl-CoA-binding domain-containing protein 4-like
blastp_uniprot_sprot sp|Q9MA55|ACBP4_ARATH 112 291 + 180 Gaps:20 29.64 668 63.13 2e-75 Acyl-CoA-binding domain-containing protein 4 OS Arabidopsis thaliana GN ACBP4 PE 1 SV 1
blastp_uniprot_sprot sp|Q8RWD9|ACBP5_ARATH 112 287 + 176 Gaps:20 29.94 648 57.22 2e-63 Acyl-CoA-binding domain-containing protein 5 OS Arabidopsis thaliana GN ACBP5 PE 1 SV 1
blastp_uniprot_sprot sp|Q5ZIX8|KDM3A_CHICK 377 470 + 94 Gaps:4 6.79 1325 45.56 2e-14 Lysine-specific demethylase 3A OS Gallus gallus GN KDM3A PE 2 SV 1
blastp_uniprot_sprot sp|Q6IRB8|KD3AA_XENLA 377 470 + 94 Gaps:4 6.76 1331 47.78 4e-14 Lysine-specific demethylase 3A-A OS Xenopus laevis GN kdm3a-a PE 2 SV 1
blastp_uniprot_sprot sp|Q7LBC6|KDM3B_HUMAN 377 470 + 94 Gaps:12 5.11 1761 45.56 1e-13 Lysine-specific demethylase 3B OS Homo sapiens GN KDM3B PE 1 SV 2
blastp_uniprot_sprot sp|Q9Y4C1|KDM3A_HUMAN 377 470 + 94 Gaps:12 6.81 1321 43.33 2e-13 Lysine-specific demethylase 3A OS Homo sapiens GN KDM3A PE 1 SV 4
blastp_uniprot_sprot sp|Q6PCM1|KDM3A_MOUSE 377 470 + 94 Gaps:4 6.80 1323 43.33 2e-13 Lysine-specific demethylase 3A OS Mus musculus GN Kdm3a PE 1 SV 1
blastp_uniprot_sprot sp|Q63679|KDM3A_RAT 377 470 + 94 Gaps:12 7.41 1214 43.33 2e-13 Lysine-specific demethylase 3A OS Rattus norvegicus GN Kdm3a PE 2 SV 1
blastp_uniprot_sprot sp|Q5HZN1|KD3AB_XENLA 377 470 + 94 Gaps:4 6.75 1334 46.67 2e-13 Lysine-specific demethylase 3A-B OS Xenopus laevis GN kdm3a-b PE 2 SV 1
blastp_uniprot_sprot sp|Q6ZPY7|KDM3B_MOUSE 377 470 + 94 Gaps:12 5.76 1562 45.56 5e-13 Lysine-specific demethylase 3B OS Mus musculus GN Kdm3b PE 2 SV 2
rpsblast_cdd gnl|CDD|202224 376 470 + 95 Gaps:7 78.95 114 25.56 2e-09 pfam02373 JmjC JmjC domain hydroxylase. The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside hydroxy-wybutosine in tRNA-Phe by catalyzing hydroxylation.
rpsblast_kog gnl|CDD|36570 376 471 + 96 Gaps:4 10.35 889 61.96 8e-39 KOG1356 KOG1356 KOG1356 Putative transcription factor 5qNCA contains JmjC domain [Transcription].
rpsblast_kog gnl|CDD|35600 159 312 + 154 Gaps:57 59.75 482 30.56 3e-09 KOG0379 KOG0379 KOG0379 Kelch repeat-containing proteins [General function prediction only].

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 111 476 366 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSiteProfiles 220 476 257 PS51184 none JmjC domain profile. IPR003347
SUPERFAMILY 202 281 80 SSF117281 none none none
Phobius 30 61 32 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 380 471 92 PTHR12549 none none none
Phobius 62 84 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 373 471 99 PF02373 none JmjC domain, hydroxylase IPR003347
SUPERFAMILY 382 470 89 SSF51197 none none none
Pfam 201 242 42 PF13964 none Kelch motif none
Phobius 12 29 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 85 90 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 91 110 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 202 282 81 G3DSA:2.120.10.80 none none IPR015915
SMART 241 476 236 SM00558 none A domain family that is part of the cupin metalloenzyme superfamily. IPR003347
Phobius 1 11 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

3 Localization

Analysis Start End Length
TMHMM 7 29 22
TMHMM 66 88 22
TMHMM 95 117 22

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting