Protein : Qrob_P0049020.2 Q. robur
Protein Identifier  ? Qrob_P0049020.2 Organism . Name  Quercus robur
Score  97.1 Score Type  egn
Protein Description  (M=2) K12891 - splicing factor, arginine/serine-rich 2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 98  
Kegg Orthology  K12891
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

46 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102613407 1 78 + 78 none 30.35 257 96.15 1e-45 serine/arginine-rich splicing factor 2-like
blastp_kegg lcl|rcu:RCOM_0460560 1 78 + 78 none 30.35 257 94.87 1e-44 serine/arginine rich splicing factor putative
blastp_kegg lcl|tcc:TCM_007486 1 78 + 78 none 29.10 268 93.59 3e-44 Serine/arginine rich splicing factor putative isoform 1
blastp_kegg lcl|vvi:100242306 1 78 + 78 none 30.59 255 92.31 4e-44 uncharacterized LOC100242306
blastp_kegg lcl|sly:101257217 1 78 + 78 none 30.00 260 92.31 5e-44 uncharacterized LOC101257217
blastp_kegg lcl|cic:CICLE_v10002266mg 1 78 + 78 none 31.08 251 91.03 5e-44 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_002G208600g 1 78 + 78 none 29.10 268 91.03 7e-44 hypothetical protein
blastp_kegg lcl|cit:102609737 1 78 + 78 none 31.08 251 91.03 7e-44 serine/arginine-rich splicing factor 2-like
blastp_kegg lcl|mdm:103434397 1 78 + 78 none 29.77 262 89.74 9e-44 serine/arginine-rich splicing factor 2-like
blastp_kegg lcl|pop:POPTR_0003s01810g 1 78 + 78 none 30.23 258 92.31 9e-44 hypothetical protein
blastp_pdb 2lec_A 4 78 + 75 Gaps:1 54.81 135 50.00 1e-16 mol:protein length:135 Serine/arginine-rich splicing factor 2
blastp_pdb 2leb_A 4 78 + 75 Gaps:1 54.81 135 50.00 1e-16 mol:protein length:135 Serine/arginine-rich splicing factor 2
blastp_pdb 2lea_A 4 78 + 75 Gaps:1 54.81 135 50.00 1e-16 mol:protein length:135 Serine/arginine-rich splicing factor 2
blastp_pdb 2kn4_A 11 78 + 68 none 43.04 158 48.53 5e-14 mol:protein length:158 Immunoglobulin G-binding protein G Splicing
blastp_pdb 2dnm_A 10 87 + 78 Gaps:3 78.64 103 39.51 2e-12 mol:protein length:103 SRp46 splicing factor
blastp_pdb 1sxl_A 4 79 + 76 Gaps:1 77.32 97 42.67 6e-10 mol:protein length:97 SEX-LETHAL PROTEIN PROTEIN
blastp_pdb 1b7f_B 3 79 + 77 Gaps:1 45.24 168 42.11 2e-09 mol:protein length:168 PROTEIN (SXL-LETHAL PROTEIN)
blastp_pdb 1b7f_A 3 79 + 77 Gaps:1 45.24 168 42.11 2e-09 mol:protein length:168 PROTEIN (SXL-LETHAL PROTEIN)
blastp_pdb 3sxl_C 4 79 + 76 Gaps:1 40.76 184 42.67 2e-09 mol:protein length:184 PROTEIN (SEX-LETHAL)
blastp_pdb 3sxl_B 4 79 + 76 Gaps:1 40.76 184 42.67 2e-09 mol:protein length:184 PROTEIN (SEX-LETHAL)
blastp_uniprot_sprot sp|Q5R1W5|SRSF2_PANTR 4 78 + 75 Gaps:1 33.48 221 50.00 1e-15 Serine/arginine-rich splicing factor 2 OS Pan troglodytes GN SRSF2 PE 2 SV 3
blastp_uniprot_sprot sp|P30352|SRSF2_CHICK 4 78 + 75 Gaps:1 33.48 221 50.00 1e-15 Serine/arginine-rich splicing factor 2 OS Gallus gallus GN SRSF2 PE 2 SV 1
blastp_uniprot_sprot sp|Q6PDU1|SRSF2_RAT 4 78 + 75 Gaps:1 33.48 221 50.00 2e-15 Serine/arginine-rich splicing factor 2 OS Rattus norvegicus GN Srsf2 PE 1 SV 3
blastp_uniprot_sprot sp|Q62093|SRSF2_MOUSE 4 78 + 75 Gaps:1 33.48 221 50.00 2e-15 Serine/arginine-rich splicing factor 2 OS Mus musculus GN Srsf2 PE 1 SV 4
blastp_uniprot_sprot sp|Q01130|SRSF2_HUMAN 4 78 + 75 Gaps:1 33.48 221 50.00 2e-15 Serine/arginine-rich splicing factor 2 OS Homo sapiens GN SRSF2 PE 1 SV 4
blastp_uniprot_sprot sp|Q3MHR5|SRSF2_BOVIN 4 78 + 75 Gaps:1 33.48 221 50.00 2e-15 Serine/arginine-rich splicing factor 2 OS Bos taurus GN SRSF2 PE 2 SV 3
blastp_uniprot_sprot sp|Q06A98|SRSF2_PIG 4 78 + 75 Gaps:1 33.48 221 50.00 2e-15 Serine/arginine-rich splicing factor 2 OS Sus scrofa GN SRSF2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9BRL6|SRSF8_HUMAN 9 87 + 79 Gaps:3 29.08 282 40.24 4e-12 Serine/arginine-rich splicing factor 8 OS Homo sapiens GN SRSF8 PE 1 SV 1
blastp_uniprot_sprot sp|Q09511|RSP4_CAEEL 6 78 + 73 none 37.24 196 39.73 3e-11 Probable splicing factor arginine/serine-rich 4 OS Caenorhabditis elegans GN rsp-4 PE 3 SV 1
blastp_uniprot_sprot sp|Q54WM4|EIF3G_DICDI 5 78 + 74 Gaps:2 31.76 233 37.84 4e-09 Eukaryotic translation initiation factor 3 subunit G OS Dictyostelium discoideum GN eif3G PE 3 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 18 78 61 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
PANTHER 2 78 77 PTHR23147:SF4 none none none
ProSiteProfiles 16 91 76 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
SUPERFAMILY 9 79 71 SSF54928 none none none
Gene3D 7 79 73 G3DSA:3.30.70.330 none none IPR012677
PANTHER 2 78 77 PTHR23147 none none none
SMART 17 87 71 SM00360 none RNA recognition motif IPR000504

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2

0 Targeting