4 GO Terms
Identifier | Name | Description |
---|---|---|
GO:0020037 | heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. |
GO:0055114 | oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
GO:0004601 | peroxidase activity | Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. |
GO:0006979 | response to oxidative stress | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. |
34 Blast
Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
---|---|---|---|---|---|---|---|---|---|---|---|
blastp_kegg | lcl|rcu:RCOM_1182920 | 11 | 323 | + | 313 | Gaps:6 | 98.46 | 324 | 76.80 | 0.0 | Cationic peroxidase 2 precursor putative (EC:1.11.1.7) |
blastp_kegg | lcl|tcc:TCM_007512 | 1 | 323 | + | 323 | Gaps:5 | 100.00 | 328 | 74.39 | 0.0 | Cationic peroxidase 2 precursor |
blastp_kegg | lcl|tcc:TCM_007520 | 11 | 323 | + | 313 | Gaps:5 | 96.95 | 328 | 76.10 | 2e-179 | Peroxidase N1 |
blastp_kegg | lcl|tcc:TCM_007514 | 1 | 323 | + | 323 | Gaps:7 | 100.00 | 326 | 73.93 | 2e-178 | Peroxidase N1 |
blastp_kegg | lcl|fve:101300728 | 22 | 323 | + | 302 | Gaps:5 | 93.31 | 329 | 78.18 | 4e-177 | peroxidase N1-like |
blastp_kegg | lcl|cit:102624908 | 12 | 323 | + | 312 | Gaps:7 | 98.15 | 325 | 74.29 | 6e-177 | peroxidase N1-like |
blastp_kegg | lcl|pop:POPTR_0016s13280g | 8 | 323 | + | 316 | Gaps:6 | 99.38 | 324 | 74.22 | 2e-176 | POPTRDRAFT_668104 hypothetical protein |
blastp_kegg | lcl|mdm:103441899 | 27 | 323 | + | 297 | Gaps:5 | 91.24 | 331 | 77.81 | 4e-175 | peroxidase N1-like |
blastp_kegg | lcl|pxb:103946278 | 15 | 323 | + | 309 | Gaps:9 | 98.45 | 323 | 74.84 | 8e-175 | peroxidase N1-like |
blastp_kegg | lcl|pmum:103319187 | 11 | 323 | + | 313 | Gaps:8 | 96.69 | 332 | 73.52 | 2e-174 | peroxidase N1-like |
blastp_pdb | 1qo4_A | 33 | 323 | + | 291 | Gaps:9 | 97.39 | 306 | 47.32 | 8e-87 | mol:protein length:306 PEROXIDASE |
blastp_pdb | 1pa2_A | 33 | 323 | + | 291 | Gaps:9 | 97.39 | 306 | 47.32 | 8e-87 | mol:protein length:306 PEROXIDASE |
blastp_pdb | 1qgj_B | 33 | 323 | + | 291 | Gaps:9 | 98.00 | 300 | 45.58 | 1e-79 | mol:protein length:300 PEROXIDASE N |
blastp_pdb | 1qgj_A | 33 | 323 | + | 291 | Gaps:9 | 98.00 | 300 | 45.58 | 1e-79 | mol:protein length:300 PEROXIDASE N |
blastp_pdb | 3hdl_A | 30 | 323 | + | 294 | Gaps:13 | 99.01 | 304 | 47.84 | 1e-77 | mol:protein length:304 Royal Palm Tree Peroxidase |
blastp_pdb | 1bgp_A | 33 | 323 | + | 291 | Gaps:18 | 94.82 | 309 | 48.12 | 3e-77 | mol:protein length:309 BARLEY GRAIN PEROXIDASE |
blastp_pdb | 1sch_B | 33 | 323 | + | 291 | Gaps:14 | 98.30 | 294 | 45.33 | 3e-77 | mol:protein length:294 PEANUT PEROXIDASE MAJOR CATIONIC ISOZYME |
blastp_pdb | 1sch_A | 33 | 323 | + | 291 | Gaps:14 | 98.30 | 294 | 45.33 | 3e-77 | mol:protein length:294 PEANUT PEROXIDASE MAJOR CATIONIC ISOZYME |
blastp_pdb | 1gwu_A | 33 | 323 | + | 291 | Gaps:17 | 97.09 | 309 | 42.00 | 6e-73 | mol:protein length:309 PEROXIDASE C1A |
blastp_pdb | 3atj_B | 33 | 323 | + | 291 | Gaps:21 | 97.09 | 309 | 42.33 | 2e-72 | mol:protein length:309 PROTEIN (HORSERADISH PEROXIDASE C1A) |
blastp_uniprot_sprot | sp|Q9XIV8|PERN1_TOBAC | 11 | 323 | + | 313 | Gaps:6 | 96.06 | 330 | 68.45 | 4e-158 | Peroxidase N1 OS Nicotiana tabacum GN poxN1 PE 1 SV 1 |
blastp_uniprot_sprot | sp|P22196|PER2_ARAHY | 11 | 323 | + | 313 | Gaps:7 | 96.36 | 330 | 69.18 | 9e-158 | Cationic peroxidase 2 OS Arachis hypogaea GN PNC2 PE 2 SV 1 |
blastp_uniprot_sprot | sp|Q43387|PER71_ARATH | 11 | 323 | + | 313 | Gaps:13 | 97.56 | 328 | 63.12 | 7e-143 | Peroxidase 71 OS Arabidopsis thaliana GN PER71 PE 1 SV 1 |
blastp_uniprot_sprot | sp|Q9FKA4|PER62_ARATH | 7 | 323 | + | 317 | Gaps:5 | 99.06 | 319 | 63.61 | 1e-142 | Peroxidase 62 OS Arabidopsis thaliana GN PER62 PE 2 SV 1 |
blastp_uniprot_sprot | sp|O80822|PER25_ARATH | 11 | 323 | + | 313 | Gaps:9 | 96.95 | 328 | 60.69 | 2e-142 | Peroxidase 25 OS Arabidopsis thaliana GN PER25 PE 2 SV 2 |
blastp_uniprot_sprot | sp|Q9FMI7|PER70_ARATH | 11 | 323 | + | 313 | Gaps:8 | 96.06 | 330 | 56.15 | 7e-121 | Peroxidase 70 OS Arabidopsis thaliana GN PER70 PE 2 SV 1 |
blastp_uniprot_sprot | sp|Q96511|PER69_ARATH | 1 | 323 | + | 323 | Gaps:16 | 100.00 | 331 | 54.08 | 6e-114 | Peroxidase 69 OS Arabidopsis thaliana GN PER69 PE 1 SV 1 |
blastp_uniprot_sprot | sp|Q9SZH2|PER43_ARATH | 30 | 323 | + | 294 | Gaps:8 | 92.02 | 326 | 51.33 | 1e-102 | Peroxidase 43 OS Arabidopsis thaliana GN PER43 PE 3 SV 2 |
blastp_uniprot_sprot | sp|O49293|PER13_ARATH | 11 | 323 | + | 313 | Gaps:16 | 98.12 | 319 | 47.92 | 3e-92 | Peroxidase 13 OS Arabidopsis thaliana GN PER13 PE 3 SV 2 |
blastp_uniprot_sprot | sp|Q43729|PER57_ARATH | 1 | 323 | + | 323 | Gaps:12 | 100.00 | 313 | 47.28 | 6e-92 | Peroxidase 57 OS Arabidopsis thaliana GN PER57 PE 1 SV 1 |
28 Domain Motifs
Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
---|---|---|---|---|---|---|---|
SUPERFAMILY | 30 | 323 | 294 | SSF48113 | none | none | IPR010255 |
Phobius | 10 | 21 | 12 | SIGNAL_PEPTIDE_H_REGION | none | Hydrophobic region of a signal peptide. | none |
ProSitePatterns | 183 | 193 | 11 | PS00435 | none | Peroxidases proximal heme-ligand signature. | IPR019793 |
Phobius | 1 | 26 | 26 | SIGNAL_PEPTIDE | none | Signal peptide region | none |
Phobius | 22 | 26 | 5 | SIGNAL_PEPTIDE_C_REGION | none | C-terminal region of a signal peptide. | none |
ProSiteProfiles | 28 | 323 | 296 | PS50873 | none | Plant heme peroxidase family profile. | IPR002016 |
Phobius | 27 | 323 | 297 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
Phobius | 1 | 9 | 9 | SIGNAL_PEPTIDE_N_REGION | none | N-terminal region of a signal peptide. | none |
Pfam | 45 | 285 | 241 | PF00141 | none | Peroxidase | IPR002016 |
Gene3D | 35 | 176 | 142 | G3DSA:1.10.520.10 | none | none | none |
PANTHER | 1 | 323 | 323 | PTHR31235 | none | none | none |
PANTHER | 1 | 323 | 323 | PTHR31235:SF14 | none | none | none |
Gene3D | 177 | 302 | 126 | G3DSA:1.10.420.10 | none | none | none |
PRINTS | 183 | 198 | 16 | PR00458 | none | Haem peroxidase superfamily signature | IPR002016 |
PRINTS | 244 | 259 | 16 | PR00458 | none | Haem peroxidase superfamily signature | IPR002016 |
PRINTS | 60 | 74 | 15 | PR00458 | none | Haem peroxidase superfamily signature | IPR002016 |
PRINTS | 118 | 135 | 18 | PR00458 | none | Haem peroxidase superfamily signature | IPR002016 |
PRINTS | 136 | 148 | 13 | PR00458 | none | Haem peroxidase superfamily signature | IPR002016 |
ProSitePatterns | 60 | 71 | 12 | PS00436 | none | Peroxidases active site signature. | IPR019794 |
PRINTS | 62 | 82 | 21 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 38 | 57 | 20 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 258 | 275 | 18 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 98 | 111 | 14 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 136 | 151 | 16 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 297 | 310 | 14 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 182 | 194 | 13 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 117 | 127 | 11 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
PRINTS | 242 | 257 | 16 | PR00461 | "KEGG:00360+1.11.1.7","KEGG:00940+1.11.1.7","MetaCyc:PWY-5461","MetaCyc:PWY-7214","MetaCyc:PWY-7445" | Plant peroxidase signature | IPR000823 |
8 Qtllist
Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
---|---|---|---|---|---|---|---|---|---|---|
Bourran2_2015_nEpis_3P | Qrob_Chr12 | 12 | s_1AOES6_1466 | s_1B0DDG_1094 | 28,97 | 28,55 | 30,1 | lod | 3.6 | 8.4 |
Bourran2_2014_nP_A4 | Qrob_Chr11 | 11 | s_1B58GB_1413 | s_1A5BYY_1671 | 11,15 | 0 | 42,38 | lod | 1,8913 | 4,5 |
Bourran2_2002_QTL16_peak_Bud_burst_A4 | Qrob_Chr11 | 11 | s_A9OIA_166 | s_1C6WBF_114 | 21,23 | 2,83 | 42,83 | lod | 5,1 | 7,2 |
Bourran2_2015_nSeqBC_3P | Qrob_Chr11 | 11 | s_1DG9PM_867 | s_1BZ083_1312 | 26,06 | 25,47 | 27,72 | lod | 3.6 | 7.1 |
Champenoux_2015_nSecLBD_3P | Qrob_Chr11 | 11 | s_1DG9PM_867 | s_1BZ083_1312 | 25,78 | 25,47 | 27,72 | lod | 6.3 | 16.6 |
Bourran2_2014_nP_3P | Qrob_Chr11 | 11 | v_11486_194 | s_1AT3E_2335 | 7,9 | 0,09 | 30,09 | lod | 2,3636 | 5 |
Bourran1_2003_QTL6_peak_Bud_burst_A4 | Qrob_Chr11 | 11 | v_12066_307 | s_1A9FKZ_348 | 3,59 | 0 | 20,89 | lod | 3,4 | 9,4 |
PM_1999_QTL17_peak_Bud_burst_3P | Qrob_Chr11 | 11 | s_1A9FKZ_348 | v_11486_883 | 4,8 | 0 | 24,8 | lod | 3,5 | 6,2 |