Protein : Qrob_P0048560.2 Q. robur
Protein Identifier  ? Qrob_P0048560.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K08917 - light-harvesting complex II chlorophyll a/b binding protein 6 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 256  
Kegg Orthology  K08917
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0009765 photosynthesis, light harvesting Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0264360 2 255 + 254 none 99.22 256 88.98 2e-158 chlorophyll A/B binding protein putative
blastp_kegg lcl|gmx:100500118 2 255 + 254 Gaps:5 99.23 261 86.49 3e-158 uncharacterized LOC100500118
blastp_kegg lcl|cmo:103485628 1 255 + 255 none 100.00 255 86.67 1e-157 chlorophyll a-b binding protein CP24 10A chloroplastic
blastp_kegg lcl|pop:POPTR_0003s01450g 1 255 + 255 Gaps:2 76.95 334 86.38 2e-155 POPTRDRAFT_813709 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10029116mg 2 255 + 254 Gaps:3 99.21 253 88.05 2e-155 hypothetical protein
blastp_kegg lcl|mdm:103453723 1 255 + 255 Gaps:6 100.00 259 86.10 4e-155 chlorophyll a-b binding protein CP24 10A chloroplastic
blastp_kegg lcl|cit:102609463 2 255 + 254 Gaps:3 99.21 253 87.65 7e-155 chlorophyll a-b binding protein CP24 10B chloroplastic-like
blastp_kegg lcl|fve:101305949 1 255 + 255 Gaps:4 100.00 257 85.21 1e-154 chlorophyll a-b binding protein CP24 10A chloroplastic-like
blastp_kegg lcl|pop:POPTR_0001s21740g 1 255 + 255 Gaps:2 100.00 257 85.99 1e-154 POPTRDRAFT_709712 chlorophyll A-B binding family protein
blastp_kegg lcl|csv:101231164 1 255 + 255 none 100.00 255 85.10 1e-154 chlorophyll a-b binding protein CP24 10A chloroplastic-like
blastp_pdb 2o01_2 67 242 + 176 Gaps:23 88.71 186 42.42 6e-32 mol:protein length:186 Type II chlorophyll a/b binding protein from
blastp_pdb 2wsf_2 67 242 + 176 Gaps:23 61.34 269 42.42 1e-31 mol:protein length:269 TYPE II CHLOROPHYLL A/B BINDING PROTEIN FROM
blastp_pdb 2wse_2 67 242 + 176 Gaps:23 61.34 269 42.42 1e-31 mol:protein length:269 TYPE II CHLOROPHYLL A/B BINDING PROTEIN FROM
blastp_pdb 2wsc_2 67 242 + 176 Gaps:23 61.34 269 42.42 1e-31 mol:protein length:269 TYPE II CHLOROPHYLL A/B BINDING PROTEIN FROM
blastp_pdb 3pl9_A 54 251 + 198 Gaps:91 86.83 243 39.81 3e-25 mol:protein length:243 Chlorophyll A-B binding protein
blastp_pdb 2o01_1 67 242 + 176 Gaps:44 82.35 187 45.45 4e-24 mol:protein length:187 AT3g54890
blastp_pdb 2wsf_1 67 253 + 187 Gaps:46 69.29 241 44.91 5e-24 mol:protein length:241 AT3G54890
blastp_pdb 2wse_1 67 253 + 187 Gaps:46 69.29 241 44.91 5e-24 mol:protein length:241 AT3G54890
blastp_pdb 2wsc_1 67 253 + 187 Gaps:46 69.29 241 44.91 5e-24 mol:protein length:241 AT3G54890
blastp_pdb 2wsf_4 11 253 + 243 Gaps:41 86.06 251 39.35 2e-23 mol:protein length:251 CHLOROPHYLL A-B BINDING PROTEIN P4 CHLOROPLA
blastp_uniprot_sprot sp|P27524|CB4A_SOLLC 1 255 + 255 Gaps:5 100.00 256 87.11 1e-151 Chlorophyll a-b binding protein CP24 10A chloroplastic OS Solanum lycopersicum GN CAP10A PE 3 SV 1
blastp_uniprot_sprot sp|P27525|CB4B_SOLLC 1 255 + 255 Gaps:3 100.00 256 84.77 4e-148 Chlorophyll a-b binding protein CP24 10B chloroplastic OS Solanum lycopersicum GN CAP10B PE 3 SV 1
blastp_uniprot_sprot sp|P36494|CB4_SPIOL 2 255 + 254 Gaps:4 98.85 261 81.01 4e-136 Chlorophyll a-b binding protein CP24 chloroplastic OS Spinacia oleracea PE 2 SV 1
blastp_uniprot_sprot sp|P13869|CB12_PETHY 5 242 + 238 Gaps:33 80.37 270 41.01 6e-34 Chlorophyll a-b binding protein chloroplastic OS Petunia hybrida PE 2 SV 1
blastp_uniprot_sprot sp|P10708|CB12_SOLLC 5 242 + 238 Gaps:33 80.37 270 39.17 7e-32 Chlorophyll a-b binding protein 7 chloroplastic OS Solanum lycopersicum GN CAB7 PE 3 SV 1
blastp_uniprot_sprot sp|Q9XF88|CB4B_ARATH 31 251 + 221 Gaps:92 81.18 287 38.63 9e-29 Chlorophyll a-b binding protein CP29.2 chloroplastic OS Arabidopsis thaliana GN LHCB4.2 PE 1 SV 1
blastp_uniprot_sprot sp|Q07473|CB4A_ARATH 65 251 + 187 Gaps:84 71.38 290 40.10 5e-28 Chlorophyll a-b binding protein CP29.1 chloroplastic OS Arabidopsis thaliana GN LHCB4.1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9S7W1|CB4C_ARATH 51 253 + 203 Gaps:91 78.26 276 40.74 8e-27 Chlorophyll a-b binding protein CP29.3 chloroplastic OS Arabidopsis thaliana GN LHCB4.3 PE 1 SV 1
blastp_uniprot_sprot sp|Q93WD2|CB29_CHLRE 54 253 + 200 Gaps:91 76.79 280 40.47 1e-25 Chlorophyll a-b binding protein CP29 OS Chlamydomonas reinhardtii GN Lhcb4 PE 1 SV 3
blastp_uniprot_sprot sp|Q9SQL2|CB24_PEA 11 253 + 243 Gaps:40 86.11 252 39.63 4e-25 Chlorophyll a-b binding protein P4 chloroplastic OS Pisum sativum GN lhcA-P4 PE 1 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 67 250 184 G3DSA:1.10.3460.10 none none IPR023329
Phobius 134 153 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 154 255 102 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 123 133 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 8 253 246 PTHR21649:SF2 none none none
SUPERFAMILY 62 255 194 SSF103511 none none IPR023329
Pfam 67 243 177 PF00504 none Chlorophyll A-B binding protein IPR022796
Phobius 1 104 104 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 8 253 246 PTHR21649 none none IPR001344
Phobius 105 122 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 50   Mitochondrion 2 0.018 0.846 NON-PLANT 50