Protein : Qrob_P0048420.2 Q. robur
Protein Identifier  ? Qrob_P0048420.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K14298 - mRNA export factor Gene Prediction Quality  validated
Protein length 

Sequence

Length: 226  
Kegg Orthology  K14298
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100250787 1 185 + 185 none 53.62 345 86.49 6e-117 rae1-like protein At1g80670
blastp_kegg lcl|gmx:100803005 1 185 + 185 Gaps:1 53.60 347 84.41 1e-115 rae1-like protein At1g80670-like
blastp_kegg lcl|gmx:100527204 1 185 + 185 Gaps:1 53.60 347 84.95 1e-115 uncharacterized LOC100527204
blastp_kegg lcl|tcc:TCM_007532 1 185 + 185 Gaps:4 54.00 350 83.07 1e-114 Transducin/WD40 repeat-like superfamily protein
blastp_kegg lcl|cam:101515756 1 185 + 185 none 53.47 346 82.70 2e-114 rae1-like protein At1g80670-like
blastp_kegg lcl|pvu:PHAVU_006G208000g 1 185 + 185 Gaps:1 53.60 347 83.33 5e-114 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10025978mg 5 185 + 181 none 51.71 350 86.19 3e-113 hypothetical protein
blastp_kegg lcl|cit:102621900 5 185 + 181 none 51.71 350 85.64 2e-112 rae1-like protein At1g80670-like
blastp_kegg lcl|fve:101304193 1 185 + 185 Gaps:2 53.74 348 83.42 9e-112 rae1-like protein At1g80670-like
blastp_kegg lcl|rcu:RCOM_0471040 6 185 + 180 none 51.58 349 83.89 2e-111 plant poly(A)+ RNA export protein putative
blastp_pdb 3mmy_G 8 194 + 187 Gaps:12 50.27 368 49.19 2e-53 mol:protein length:368 mRNA export factor
blastp_pdb 3mmy_E 8 194 + 187 Gaps:12 50.27 368 49.19 2e-53 mol:protein length:368 mRNA export factor
blastp_pdb 3mmy_C 8 194 + 187 Gaps:12 50.27 368 49.19 2e-53 mol:protein length:368 mRNA export factor
blastp_pdb 3mmy_A 8 194 + 187 Gaps:12 50.27 368 49.19 2e-53 mol:protein length:368 mRNA export factor
blastp_pdb 1erj_C 1 186 + 186 Gaps:51 62.34 393 40.41 1e-09 mol:protein length:393 TRANSCRIPTIONAL REPRESSOR TUP1
blastp_pdb 1erj_B 1 186 + 186 Gaps:51 62.34 393 40.41 1e-09 mol:protein length:393 TRANSCRIPTIONAL REPRESSOR TUP1
blastp_pdb 1erj_A 1 186 + 186 Gaps:51 62.34 393 40.41 1e-09 mol:protein length:393 TRANSCRIPTIONAL REPRESSOR TUP1
blastp_pdb 3n0d_A 24 184 + 161 Gaps:25 79.05 315 39.36 2e-09 mol:protein length:315 WD repeat-containing protein 5
blastp_pdb 3n0e_A 24 184 + 161 Gaps:25 79.05 315 39.36 2e-09 mol:protein length:315 WD repeat-containing protein 5
blastp_pdb 2co0_C 24 183 + 160 Gaps:25 79.05 315 39.36 2e-09 mol:protein length:315 WD-REPEAT PROTEIN 5
blastp_uniprot_sprot sp|Q38942|RAE1L_ARATH 6 185 + 180 none 51.58 349 78.33 6e-105 Rae1-like protein At1g80670 OS Arabidopsis thaliana GN At1g80670 PE 2 SV 2
blastp_uniprot_sprot sp|Q5FVA9|RAE1L_XENTR 8 181 + 174 Gaps:9 47.55 368 52.00 6e-54 mRNA export factor OS Xenopus tropicalis GN rae1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5RF99|RAEL1_PONAB 8 194 + 187 Gaps:12 50.27 368 49.19 8e-53 mRNA export factor OS Pongo abelii GN RAE1 PE 2 SV 1
blastp_uniprot_sprot sp|P78406|RAE1L_HUMAN 8 194 + 187 Gaps:12 50.27 368 49.19 8e-53 mRNA export factor OS Homo sapiens GN RAE1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5E9A4|RAE1L_BOVIN 8 194 + 187 Gaps:12 50.27 368 49.73 2e-52 mRNA export factor OS Bos taurus GN RAE1 PE 2 SV 1
blastp_uniprot_sprot sp|A5GFN6|RAEL1_PIG 8 194 + 187 Gaps:12 50.27 368 49.19 2e-52 mRNA export factor OS Sus scrofa GN RAE1 PE 3 SV 1
blastp_uniprot_sprot sp|Q3SWS8|RAE1L_RAT 8 194 + 187 Gaps:12 50.27 368 49.19 2e-52 mRNA export factor OS Rattus norvegicus GN Rae1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8C570|RAE1L_MOUSE 8 194 + 187 Gaps:12 50.27 368 49.19 2e-52 mRNA export factor OS Mus musculus GN Rae1 PE 1 SV 1
blastp_uniprot_sprot sp|Q4R6D2|RAE1L_MACFA 8 194 + 187 Gaps:12 50.27 368 48.65 8e-51 mRNA export factor OS Macaca fascicularis GN RAE1 PE 2 SV 1
blastp_uniprot_sprot sp|Q7ZWF0|RAE1L_DANRE 10 194 + 185 Gaps:12 49.73 368 46.99 2e-50 mRNA export factor OS Danio rerio GN rae1 PE 2 SV 2

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 8 50 43 SM00320 none WD40 repeats IPR001680
SMART 59 97 39 SM00320 none WD40 repeats IPR001680
SMART 142 178 37 SM00320 none WD40 repeats IPR001680
SMART 101 139 39 SM00320 none WD40 repeats IPR001680
PANTHER 7 194 188 PTHR10971:SF11 none none none
ProSiteProfiles 22 59 38 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
PRINTS 84 98 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 126 140 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 37 51 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
Pfam 22 50 29 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 68 96 29 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 110 139 30 PF00400 none WD domain, G-beta repeat IPR001680
ProSiteProfiles 107 148 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSiteProfiles 18 148 131 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
SUPERFAMILY 20 183 164 SSF50978 none none IPR017986
ProSiteProfiles 68 106 39 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
PANTHER 7 194 188 PTHR10971 none none none
Gene3D 19 185 167 G3DSA:2.130.10.10 none none IPR015943

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2

0 Targeting