Protein : Qrob_P0045980.2 Q. robur
Protein Identifier  ? Qrob_P0045980.2 Organism . Name  Quercus robur
Score  25.4 Score Type  egn
Protein Description  (M=1) KOG0111//KOG0122//KOG0123//KOG0127//KOG0130//KOG0145//KOG0146//KOG0148//KOG0149//KOG4205 - Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification protein turnover chaperones]. // Translation initiation factor 3 subunit g (eIF-3g) [Translation ribosomal structure and biogenesis]. // Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification Translation ribosomal structure and biogenesis]. // Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]. // RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]. // RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]. // RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]. // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification Translation ribosomal structure and biogenesis]. // Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]. // RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex subunit HRP1 [RNA processing and modification]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 145  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103339827 1 144 + 144 Gaps:4 100.00 140 80.71 4e-79 glycine-rich RNA-binding protein 6 mitochondrial
blastp_kegg lcl|pxb:103941612 1 144 + 144 Gaps:6 100.00 142 77.46 4e-76 glycine-rich RNA-binding protein 6 mitochondrial-like
blastp_kegg lcl|pxb:103963560 1 144 + 144 Gaps:6 100.00 142 77.46 4e-76 glycine-rich RNA-binding protein 6 mitochondrial-like
blastp_kegg lcl|mdm:103450206 1 144 + 144 Gaps:6 100.00 142 75.35 5e-74 glycine-rich RNA-binding protein 6 mitochondrial-like
blastp_kegg lcl|cam:101497496 1 144 + 144 Gaps:5 100.00 139 77.70 7e-74 glycine-rich RNA-binding protein 6 mitochondrial-like
blastp_kegg lcl|pvu:PHAVU_001G170000g 1 144 + 144 Gaps:5 100.00 139 75.54 2e-72 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa013084mg 1 144 + 144 Gaps:4 100.00 140 80.00 6e-70 hypothetical protein
blastp_kegg lcl|fve:101304107 1 144 + 144 Gaps:4 100.00 140 72.86 1e-68 glycine-rich RNA-binding protein 2-like
blastp_kegg lcl|cic:CICLE_v10013045mg 1 144 + 144 Gaps:9 100.00 145 74.48 3e-67 hypothetical protein
blastp_kegg lcl|cit:102609303 1 144 + 144 Gaps:9 100.00 145 74.48 3e-67 glycine-rich RNA-binding protein 6 mitochondrial-like
blastp_pdb 1x5s_A 39 123 + 85 Gaps:1 84.31 102 45.35 5e-18 mol:protein length:102 Cold-inducible RNA-binding protein
blastp_pdb 2fc8_A 37 117 + 81 Gaps:3 76.47 102 46.15 1e-14 mol:protein length:102 NCL protein
blastp_pdb 1u1r_A 35 123 + 89 Gaps:5 73.47 196 40.97 1e-13 mol:protein length:196 Heterogeneous nuclear ribonucleoprotein A1
blastp_pdb 1u1q_A 35 123 + 89 Gaps:5 73.47 196 40.97 1e-13 mol:protein length:196 Heterogeneous nuclear ribonucleoprotein A1
blastp_pdb 1u1p_A 35 123 + 89 Gaps:5 73.47 196 40.97 1e-13 mol:protein length:196 Heterogeneous nuclear ribonucleoprotein A1
blastp_pdb 1u1o_A 35 123 + 89 Gaps:5 73.47 196 40.97 1e-13 mol:protein length:196 Heterogeneous nuclear ribonucleoprotein A1
blastp_pdb 1u1n_A 35 123 + 89 Gaps:5 73.47 196 40.97 1e-13 mol:protein length:196 Heterogeneous nuclear ribonucleoprotein A1
blastp_pdb 1u1m_A 35 123 + 89 Gaps:5 73.47 196 40.97 1e-13 mol:protein length:196 Heterogeneous nuclear ribonucleoprotein A1
blastp_pdb 1u1l_A 35 123 + 89 Gaps:5 73.47 196 40.97 1e-13 mol:protein length:196 Heterogeneous nuclear ribonucleoprotein A1
blastp_pdb 1u1k_A 35 123 + 89 Gaps:5 73.47 196 40.97 1e-13 mol:protein length:196 Heterogeneous nuclear ribonucleoprotein A1
blastp_uniprot_sprot sp|Q9FZ84|RBG6_ARATH 22 114 + 93 none 60.00 155 47.31 3e-20 Glycine-rich RNA-binding protein 6 mitochondrial OS Arabidopsis thaliana GN RBG6 PE 2 SV 1
blastp_uniprot_sprot sp|Q43472|GRP_HORVU 39 117 + 79 none 49.07 161 50.63 9e-20 Glycine-rich RNA-binding protein blt801 OS Hordeum vulgare GN blt801 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SVM8|RBG2_ARATH 27 121 + 95 none 60.13 158 49.47 9e-19 Glycine-rich RNA-binding protein 2 mitochondrial OS Arabidopsis thaliana GN RBG2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LIS2|RBG4_ARATH 1 121 + 121 Gaps:5 86.76 136 42.37 1e-18 Glycine-rich RNA-binding protein 4 mitochondrial OS Arabidopsis thaliana GN RBG4 PE 2 SV 1
blastp_uniprot_sprot sp|Q99070|GRP2_SORBI 39 116 + 78 none 46.43 168 47.44 7e-18 Glycine-rich RNA-binding protein 2 OS Sorghum bicolor GN GRP2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C909|RBG5_ARATH 1 114 + 114 Gaps:11 37.72 289 45.87 2e-17 Glycine-rich RNA-binding protein 5 mitochondrial OS Arabidopsis thaliana GN RBG5 PE 2 SV 1
blastp_uniprot_sprot sp|Q03878|GRP1_DAUCA 39 116 + 78 none 49.68 157 46.15 6e-17 Glycine-rich RNA-binding protein OS Daucus carota PE 2 SV 1
blastp_uniprot_sprot sp|P49311|GRP2_SINAL 39 115 + 77 none 45.56 169 48.05 1e-16 Glycine-rich RNA-binding protein GRP2A OS Sinapis alba PE 2 SV 1
blastp_uniprot_sprot sp|P10979|GRPA_MAIZE 39 116 + 78 none 49.68 157 44.87 1e-16 Glycine-rich RNA-binding abscisic acid-inducible protein OS Zea mays GN RAB15 PE 1 SV 1
blastp_uniprot_sprot sp|Q03251|RBG8_ARATH 39 115 + 77 none 45.56 169 46.75 3e-16 Glycine-rich RNA-binding protein 8 OS Arabidopsis thaliana GN RBG8 PE 1 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 39 112 74 SM00360 none RNA recognition motif IPR000504
PANTHER 39 140 102 PTHR24012:SF340 none none none
Gene3D 36 121 86 G3DSA:3.30.70.330 none none IPR012677
SUPERFAMILY 37 141 105 SSF54928 none none none
Pfam 40 106 67 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
PANTHER 39 140 102 PTHR24012 none none none
ProSiteProfiles 38 116 79 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504

0 Localization

0 Qtllist

0 Targeting