Protein : Qrob_P0045240.2 Q. robur
Protein Identifier  ? Qrob_P0045240.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0109//KOG0110//KOG0123//KOG0125//KOG0127//KOG0131//KOG0144//KOG0145//KOG4211//KOG4212 - RNA-binding protein LARK contains RRM and retroviral-type Zn-finger domains [RNA processing and modification General function prediction only]. // RNA-binding protein (RRM superfamily) [General function prediction only]. // Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification Translation ribosomal structure and biogenesis]. // Ataxin 2-binding protein (RRM superfamily) [General function prediction only]. // Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]. // Splicing factor 3b subunit 4 [RNA processing and modification]. // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]. // RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]. // Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]. // RNA-binding protein hnRNP-M [RNA processing and modification]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 319  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

49 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102615204 1 314 + 314 Gaps:38 99.35 306 57.57 4e-102 31 kDa ribonucleoprotein chloroplastic-like
blastp_kegg lcl|cic:CICLE_v10001605mg 1 314 + 314 Gaps:38 83.75 363 58.22 3e-101 hypothetical protein
blastp_kegg lcl|vvi:100248931 43 315 + 273 Gaps:21 86.39 294 62.60 3e-101 31 kDa ribonucleoprotein chloroplastic-like
blastp_kegg lcl|pmum:103319578 39 312 + 274 Gaps:26 81.31 305 65.73 5e-99 29 kDa ribonucleoprotein B chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa009133mg 39 312 + 274 Gaps:26 81.31 305 65.32 1e-97 hypothetical protein
blastp_kegg lcl|cmo:103503681 45 289 + 245 Gaps:19 75.08 301 71.24 6e-97 31 kDa ribonucleoprotein chloroplastic
blastp_kegg lcl|pop:POPTR_0005s17450g 41 316 + 276 Gaps:13 85.11 309 62.74 5e-96 POPTRDRAFT_716445 RNA recognition motif-containing family protein
blastp_kegg lcl|csv:101227118 24 289 + 266 Gaps:27 81.00 300 66.67 5e-96 31 kDa ribonucleoprotein chloroplastic-like
blastp_kegg lcl|csv:101208444 24 289 + 266 Gaps:27 81.00 300 66.67 5e-96 31 kDa ribonucleoprotein chloroplastic-like
blastp_kegg lcl|tcc:TCM_034840 51 312 + 262 Gaps:26 81.38 290 66.53 6e-96 RNA-binding family protein putative
blastp_pdb 3md3_A 101 267 + 167 Gaps:8 95.78 166 30.82 9e-17 mol:protein length:166 Nuclear and cytoplasmic polyadenylated RNA-bi
blastp_pdb 1g2e_A 97 258 + 162 Gaps:13 91.62 167 30.07 1e-14 mol:protein length:167 PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD
blastp_pdb 1fxl_A 97 258 + 162 Gaps:13 91.62 167 30.07 1e-14 mol:protein length:167 PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD
blastp_pdb 1fnx_H 97 267 + 171 Gaps:15 94.25 174 28.05 4e-14 mol:protein length:174 HU ANTIGEN C
blastp_pdb 3md1_B 192 267 + 76 Gaps:1 90.36 83 41.33 6e-10 mol:protein length:83 Nuclear and cytoplasmic polyadenylated RNA-bi
blastp_pdb 3md1_A 192 267 + 76 Gaps:1 90.36 83 41.33 6e-10 mol:protein length:83 Nuclear and cytoplasmic polyadenylated RNA-bi
blastp_pdb 2err_A 100 267 + 168 Gaps:8 73.39 109 58.75 9e-10 mol:protein length:109 Ataxin-2-binding protein 1
blastp_pdb 2cq3_A 100 267 + 168 Gaps:4 81.55 103 54.76 1e-09 mol:protein length:103 RNA-binding protein 9
blastp_pdb 1p1t_A 101 267 + 167 Gaps:2 77.88 104 48.15 1e-07 mol:protein length:104 Cleavage stimulation factor 64 kDa subunit
blastp_pdb 2dgt_A 100 184 + 85 Gaps:7 84.78 92 32.05 6e-07 mol:protein length:92 RNA-binding protein 30
blastp_uniprot_sprot sp|P19682|ROC3_NICSY 92 267 + 176 Gaps:8 68.12 276 43.09 8e-24 28 kDa ribonucleoprotein chloroplastic OS Nicotiana sylvestris PE 1 SV 1
blastp_uniprot_sprot sp|Q04836|ROC3_ARATH 63 267 + 205 Gaps:8 62.61 329 40.29 2e-23 31 kDa ribonucleoprotein chloroplastic OS Arabidopsis thaliana GN RBP31 PE 1 SV 1
blastp_uniprot_sprot sp|P28644|ROC1_SPIOL 100 267 + 168 Gaps:4 75.54 233 40.34 4e-21 28 kDa ribonucleoprotein chloroplastic OS Spinacia oleracea PE 1 SV 1
blastp_uniprot_sprot sp|P19683|ROC4_NICSY 100 267 + 168 Gaps:6 55.87 315 42.05 6e-21 31 kDa ribonucleoprotein chloroplastic OS Nicotiana sylvestris PE 1 SV 1
blastp_uniprot_sprot sp|P19684|ROC5_NICSY 100 272 + 173 Gaps:13 60.19 324 40.00 7e-21 33 kDa ribonucleoprotein chloroplastic OS Nicotiana sylvestris PE 1 SV 1
blastp_uniprot_sprot sp|P49314|ROC2_NICPL 85 273 + 189 Gaps:35 75.34 292 29.09 2e-18 31 kDa ribonucleoprotein chloroplastic OS Nicotiana plumbaginifolia PE 1 SV 1
blastp_uniprot_sprot sp|Q08937|ROC2_NICSY 85 273 + 189 Gaps:35 75.60 291 29.09 2e-18 29 kDa ribonucleoprotein B chloroplastic OS Nicotiana sylvestris PE 1 SV 1
blastp_uniprot_sprot sp|Q08935|ROC1_NICSY 92 268 + 177 Gaps:28 69.23 273 41.27 2e-17 29 kDa ribonucleoprotein A chloroplastic OS Nicotiana sylvestris PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZUU4|ROC1_ARATH 86 270 + 185 Gaps:37 70.59 289 29.41 1e-16 Ribonucleoprotein At2g37220 chloroplastic OS Arabidopsis thaliana GN At2g37220 PE 1 SV 1
blastp_uniprot_sprot sp|P49313|ROC1_NICPL 96 268 + 173 Gaps:34 68.46 279 39.79 6e-16 30 kDa ribonucleoprotein chloroplastic OS Nicotiana plumbaginifolia PE 2 SV 1

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 92 275 184 PTHR24011:SF95 none none none
SMART 100 172 73 SM00360 none RNA recognition motif IPR000504
SMART 194 268 75 SM00360 none RNA recognition motif IPR000504
PANTHER 1 8 8 PTHR24011:SF95 none none none
Gene3D 67 179 113 G3DSA:3.30.70.330 none none IPR012677
Gene3D 180 271 92 G3DSA:3.30.70.330 none none IPR012677
Pfam 104 170 67 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
Pfam 195 266 72 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
PANTHER 1 8 8 PTHR24011 none none none
PANTHER 92 275 184 PTHR24011 none none none
ProSiteProfiles 193 272 80 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
ProSiteProfiles 99 176 78 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
SUPERFAMILY 181 275 95 SSF54928 none none none
SUPERFAMILY 65 184 120 SSF54928 none none none

0 Localization

0 Qtllist

0 Targeting