Protein : Qrob_P0043980.2 Q. robur
Protein Identifier  ? Qrob_P0043980.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=16) PF00643 - B-box zinc finger Gene Prediction Quality  validated
Protein length 

Sequence

Length: 208  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sly:101249106 3 205 + 203 Gaps:4 66.78 298 63.32 2e-82 probable salt tolerance-like protein At1g78600-like
blastp_kegg lcl|sot:102587821 3 205 + 203 Gaps:4 66.78 298 63.32 6e-82 probable salt tolerance-like protein At1g78600-like
blastp_kegg lcl|pda:103710261 3 202 + 200 Gaps:2 66.89 296 61.11 2e-79 probable salt tolerance-like protein At1g78600
blastp_kegg lcl|sot:102593998 3 205 + 203 Gaps:4 66.56 299 60.80 8e-77 probable salt tolerance-like protein At1g78600-like
blastp_kegg lcl|cic:CICLE_v10016655mg 3 207 + 205 Gaps:6 95.83 216 59.42 3e-76 hypothetical protein
blastp_kegg lcl|gmx:100819131 2 205 + 204 Gaps:7 52.67 374 61.42 5e-76 probable salt tolerance-like protein At1g78600-like
blastp_kegg lcl|rcu:RCOM_0107360 3 205 + 203 Gaps:5 68.28 290 64.14 5e-76 zinc finger protein putative
blastp_kegg lcl|pvu:PHAVU_005G076700g 3 205 + 203 Gaps:4 67.92 293 60.30 1e-75 hypothetical protein
blastp_kegg lcl|cam:101511597 3 205 + 203 Gaps:7 68.04 291 61.11 1e-75 probable salt tolerance-like protein At1g78600-like
blastp_kegg lcl|cit:102627126 3 207 + 205 Gaps:6 94.52 219 58.94 5e-75 probable salt tolerance-like protein At1g78600-like
blastp_uniprot_sprot sp|Q9SYM2|STHY_ARATH 3 205 + 203 Gaps:13 68.90 299 53.88 3e-65 Probable salt tolerance-like protein At1g78600 OS Arabidopsis thaliana GN At1g78600 PE 1 SV 2
blastp_uniprot_sprot sp|Q96288|STO_ARATH 3 127 + 125 Gaps:11 53.23 248 56.06 3e-42 Salt tolerance protein OS Arabidopsis thaliana GN STO PE 1 SV 1
blastp_uniprot_sprot sp|Q9SID1|STH_ARATH 3 116 + 114 Gaps:2 45.80 238 62.39 1e-38 Salt tolerance-like protein OS Arabidopsis thaliana GN STH PE 1 SV 2
blastp_uniprot_sprot sp|Q9LQZ7|STHX_ARATH 3 108 + 106 Gaps:1 32.33 331 55.14 6e-35 Probable salt tolerance-like protein At1g75540 OS Arabidopsis thaliana GN At1g75540 PE 1 SV 1
blastp_uniprot_sprot sp|Q0IGM7|BBX20_ARATH 3 136 + 134 Gaps:8 57.85 242 46.43 5e-33 B-box zinc finger protein 20 OS Arabidopsis thaliana GN BBX20 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SK53|COL3_ARATH 7 132 + 126 Gaps:18 36.73 294 46.30 2e-17 Zinc finger protein CONSTANS-LIKE 3 OS Arabidopsis thaliana GN COL3 PE 1 SV 1
blastp_uniprot_sprot sp|O50055|COL1_ARATH 2 100 + 99 Gaps:16 30.14 355 54.21 7e-17 Zinc finger protein CONSTANS-LIKE 1 OS Arabidopsis thaliana GN COL1 PE 1 SV 1
blastp_uniprot_sprot sp|Q940T9|COL4_ARATH 7 104 + 98 Gaps:11 24.03 362 44.83 7e-16 Zinc finger protein CONSTANS-LIKE 4 OS Arabidopsis thaliana GN COL4 PE 2 SV 2
blastp_uniprot_sprot sp|Q96502|COL2_ARATH 2 100 + 99 Gaps:15 28.53 347 52.53 3e-15 Zinc finger protein CONSTANS-LIKE 2 OS Arabidopsis thaliana GN COL2 PE 1 SV 1
blastp_uniprot_sprot sp|Q39057|CONS_ARATH 2 100 + 99 Gaps:15 26.27 373 51.02 1e-14 Zinc finger protein CONSTANS OS Arabidopsis thaliana GN CO PE 1 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 2 49 48 SM00336 none B-Box-type zinc finger IPR000315
SMART 56 103 48 SM00336 none B-Box-type zinc finger IPR000315
ProSiteProfiles 56 103 48 PS50119 none Zinc finger B-box type profile. IPR000315
Pfam 59 98 40 PF00643 none B-box zinc finger IPR000315
PANTHER 4 147 144 PTHR31832:SF4 none none none
ProSiteProfiles 2 49 48 PS50119 none Zinc finger B-box type profile. IPR000315
PANTHER 4 147 144 PTHR31832 none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

0 Targeting