Protein : Qrob_P0041640.2 Q. robur
Protein Identifier  ? Qrob_P0041640.2 Organism . Name  Quercus robur
Score  97.1 Score Type  egn
Protein Description  (M=1) PF05856 - ARP2/3 complex 20 kDa subunit (ARPC4) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 205  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0005885 Arp2/3 protein complex A stable protein complex that contains two actin-related proteins, Arp2 and Arp3, and five novel proteins (ARPC1-5), and functions in the nucleation of branched actin filaments.
GO:0015629 actin cytoskeleton The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
GO:0030041 actin filament polymerization Assembly of actin filaments by the addition of actin monomers to a filament.
GO:0034314 Arp2/3 complex-mediated actin nucleation The actin nucleation process in which actin monomers combine to form a new branch on the side of an existing actin filament; mediated by the Arp2/3 protein complex and its interaction with other proteins.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101232165 70 113 + 44 none 28.95 152 79.55 3e-13 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic-like
blastp_kegg lcl|csv:101226948 70 113 + 44 none 23.40 188 79.55 3e-13 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic-like
blastp_kegg lcl|vvi:4025044 70 116 + 47 none 12.95 363 74.47 8e-13 ndhA ndh1 ViviCp079 NADH dehydrogenase subunit 1
blastp_kegg lcl|fve:10251588 70 113 + 44 none 12.22 360 79.55 1e-12 ndhA FvH4_C0110 NADH-plastoquinone oxidoreductase subunit 1
blastp_kegg lcl|csv:3429252 70 113 + 44 none 12.26 359 79.55 2e-12 ndhA ndh1 CsCp110 NADH dehydrogenase subunit 1
blastp_kegg lcl|tcc:ThcaC_p069 70 115 + 46 none 12.67 363 73.91 7e-12 ndhA NADH-plastoquinone oxidoreductase subunit 1
blastp_kegg lcl|pop:Poptr_cp084 70 113 + 44 none 12.05 365 75.00 3e-11 ndhA NADH dehydrogenase subunit 1 (EC:1.6.5.3)
blastp_kegg lcl|rcu:RCOM_ORF00111 70 113 + 44 none 12.12 363 75.00 3e-11 ndhA NADH dehydrogenase subunit 1
blastp_kegg lcl|pda:8890577 70 113 + 44 none 12.12 363 72.73 4e-11 ndhA PhdaC_p080 NADH-plastoquinone oxidoreductase chain 1
blastp_kegg lcl|pmum:18668096 70 113 + 44 none 12.12 363 75.00 5e-11 ndhA CP95_p010 NADH-plastoquinone oxidoreductase subunit 1
blastp_pdb 3rse_F 150 203 + 54 Gaps:7 27.98 168 53.19 1e-06 mol:protein length:168 Actin-related protein 2/3 complex subunit 4
blastp_pdb 3dxm_F 150 203 + 54 Gaps:7 27.98 168 53.19 1e-06 mol:protein length:168 Actin-related protein 2/3 complex subunit 4
blastp_pdb 3dxk_F 150 203 + 54 Gaps:7 27.98 168 53.19 1e-06 mol:protein length:168 Actin-related protein 2/3 complex subunit 4
blastp_pdb 2p9u_F 150 203 + 54 Gaps:7 27.98 168 53.19 1e-06 mol:protein length:168 Actin-related protein 2/3 complex subunit 4
blastp_pdb 2p9s_F 150 203 + 54 Gaps:7 27.98 168 53.19 1e-06 mol:protein length:168 Actin-related protein 2/3 complex subunit 4
blastp_pdb 2p9p_F 150 203 + 54 Gaps:7 27.98 168 53.19 1e-06 mol:protein length:168 Actin-related protein 2/3 complex subunit 4
blastp_pdb 2p9n_F 150 203 + 54 Gaps:7 27.98 168 53.19 1e-06 mol:protein length:168 Actin-related protein 2/3 complex subunit 4
blastp_pdb 2p9l_F 150 203 + 54 Gaps:7 27.98 168 53.19 1e-06 mol:protein length:168 Actin-related protein 2/3 complex subunit 4
blastp_pdb 2p9k_F 150 203 + 54 Gaps:7 27.98 168 53.19 1e-06 mol:protein length:168 Actin-related protein 2/3 complex subunit 4
blastp_pdb 2p9i_F 150 203 + 54 Gaps:7 27.98 168 53.19 1e-06 mol:protein length:168 Actin-related protein 2/3 complex subunit 4
blastp_uniprot_sprot sp|Q332S2|NU1C_LACSA 70 115 + 46 none 12.67 363 76.09 3e-14 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic OS Lactuca sativa GN ndhA PE 3 SV 1
blastp_uniprot_sprot sp|Q0ZIW3|NU1C_VITVI 70 116 + 47 none 12.95 363 74.47 3e-14 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic OS Vitis vinifera GN ndhA PE 3 SV 1
blastp_uniprot_sprot sp|Q1KXQ8|NU1C_HELAN 70 113 + 44 none 12.12 363 79.55 3e-14 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic OS Helianthus annuus GN ndhA PE 3 SV 1
blastp_uniprot_sprot sp|Q2QD36|NU1C_CUCSA 70 113 + 44 none 12.12 363 79.55 7e-14 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic OS Cucumis sativus GN ndhA PE 3 SV 1
blastp_uniprot_sprot sp|Q0G9Q7|NU1C_DAUCA 70 113 + 44 none 12.12 363 77.27 1e-13 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic OS Daucus carota GN ndhA PE 3 SV 1
blastp_uniprot_sprot sp|Q68RV1|NU1C_PANGI 70 113 + 44 none 12.12 363 75.00 2e-13 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic OS Panax ginseng GN ndhA PE 3 SV 1
blastp_uniprot_sprot sp|Q9M3I6|NU1C_SPIOL 70 116 + 47 none 12.88 365 72.34 3e-13 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic OS Spinacia oleracea GN ndhA PE 3 SV 1
blastp_uniprot_sprot sp|A0A390|NU1C_COFAR 70 113 + 44 none 12.12 363 77.27 4e-13 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic OS Coffea arabica GN ndhA PE 3 SV 1
blastp_uniprot_sprot sp|Q49KU3|NU1C_EUCGG 70 115 + 46 none 12.67 363 71.74 4e-13 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic OS Eucalyptus globulus subsp. globulus GN ndhA PE 3 SV 1
blastp_uniprot_sprot sp|Q9BBN9|NU1C_LOTJA 70 115 + 46 none 12.67 363 69.57 5e-13 NAD(P)H-quinone oxidoreductase subunit 1 chloroplastic OS Lotus japonicus GN ndhA PE 3 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 153 171 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 115 125 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 93 114 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 71 113 43 PTHR11432 none none IPR001694
Pfam 69 116 48 PF00146 none NADH dehydrogenase IPR001694
SUPERFAMILY 155 203 49 SSF69645 none none none
Phobius 20 42 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 148 152 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 126 147 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 19 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 43 92 50 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 164 203 40 G3DSA:3.30.1460.20 none none none
PANTHER 71 113 43 PTHR11432:SF5 none none none
Pfam 165 203 39 PF05856 none ARP2/3 complex 20 kDa subunit (ARPC4) IPR008384
Phobius 172 204 33 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

4 Localization

Analysis Start End Length
TMHMM 92 114 22
TMHMM 124 146 22
TMHMM 153 172 19
TMHMM 20 42 22

0 Qtllist

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 37   Secretory pathway 1 0.982 0.055 NON-PLANT 37