Protein : Qrob_P0041500.2 Q. robur
Protein Identifier  ? Qrob_P0041500.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0108//KOG0111//KOG0113//KOG0116//KOG0127//KOG0131//KOG0148//KOG0149//KOG4205//KOG4207 - mRNA cleavage and polyadenylation factor I complex subunit RNA15 [RNA processing and modification]. // Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification protein turnover chaperones]. // U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]. // RasGAP SH3 binding protein rasputin contains NTF2 and RRM domains [Signal transduction mechanisms]. // Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]. // Splicing factor 3b subunit 4 [RNA processing and modification]. // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification Translation ribosomal structure and biogenesis]. // Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]. // RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex subunit HRP1 [RNA processing and modification]. // Predicted splicing factor SR protein superfamily [RNA processing and modification]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 145  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0523760 1 130 + 130 Gaps:3 99.25 134 70.68 6e-59 glycine-rich RNA-binding protein putative
blastp_kegg lcl|cam:101489434 1 120 + 120 none 82.19 146 71.67 3e-58 glycine-rich RNA-binding protein 2 mitochondrial-like
blastp_kegg lcl|mtr:MTR_3g084040 1 117 + 117 Gaps:1 79.45 146 75.00 5e-57 Glycine-rich RNA-binding protein
blastp_kegg lcl|gmx:100499841 1 118 + 118 none 82.52 143 73.73 6e-57 uncharacterized LOC100499841
blastp_kegg lcl|gmx:100527220 1 116 + 116 none 84.06 138 75.00 2e-56 uncharacterized LOC100527220
blastp_kegg lcl|tcc:TCM_020236 1 121 + 121 Gaps:6 85.61 139 75.63 2e-56 Glycine-rich RNA-binding protein 4 isoform 1
blastp_kegg lcl|pop:POPTR_0017s08570g 1 132 + 132 Gaps:1 100.00 131 68.70 8e-55 glycine-rich RNA-binding family protein
blastp_kegg lcl|fve:101295993 1 120 + 120 Gaps:2 82.52 143 75.42 5e-54 glycine-rich RNA-binding protein 2 mitochondrial-like
blastp_kegg lcl|pvu:PHAVU_001G267100g 1 114 + 114 none 84.44 135 74.56 1e-53 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa013208mg 1 116 + 116 Gaps:1 85.19 135 73.91 3e-53 hypothetical protein
blastp_pdb 1x5s_A 37 121 + 85 Gaps:3 86.27 102 48.86 1e-20 mol:protein length:102 Cold-inducible RNA-binding protein
blastp_pdb 3md1_B 38 112 + 75 none 90.36 83 46.67 4e-18 mol:protein length:83 Nuclear and cytoplasmic polyadenylated RNA-bi
blastp_pdb 3md1_A 38 112 + 75 none 90.36 83 46.67 4e-18 mol:protein length:83 Nuclear and cytoplasmic polyadenylated RNA-bi
blastp_pdb 3md3_A 38 112 + 75 none 45.18 166 46.67 2e-17 mol:protein length:166 Nuclear and cytoplasmic polyadenylated RNA-bi
blastp_pdb 2rne_A 38 121 + 84 none 73.04 115 42.86 2e-17 mol:protein length:115 Tia1 protein
blastp_pdb 2dgo_A 38 121 + 84 none 73.04 115 42.86 2e-17 mol:protein length:115 Cytotoxic granule-associated RNA binding prot
blastp_pdb 2dh7_A 38 119 + 82 none 78.10 105 42.68 1e-16 mol:protein length:105 Nucleolysin TIAR
blastp_pdb 2fc8_A 30 115 + 86 Gaps:3 81.37 102 42.17 3e-16 mol:protein length:102 NCL protein
blastp_pdb 2cqb_A 33 121 + 89 Gaps:5 92.16 102 40.43 4e-16 mol:protein length:102 Peptidyl-prolyl cis-trans isomerase E
blastp_pdb 3mdf_B 33 113 + 81 Gaps:2 97.65 85 42.17 6e-16 mol:protein length:85 Peptidyl-prolyl cis-trans isomerase E
blastp_uniprot_sprot sp|Q9SVM8|RBG2_ARATH 1 121 + 121 Gaps:1 75.95 158 67.50 6e-53 Glycine-rich RNA-binding protein 2 mitochondrial OS Arabidopsis thaliana GN RBG2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LIS2|RBG4_ARATH 1 121 + 121 Gaps:1 88.24 136 63.33 2e-48 Glycine-rich RNA-binding protein 4 mitochondrial OS Arabidopsis thaliana GN RBG4 PE 2 SV 1
blastp_uniprot_sprot sp|P39697|RT19_ARATH 1 121 + 121 Gaps:5 54.72 212 59.48 2e-38 40S ribosomal protein S19 mitochondrial OS Arabidopsis thaliana GN RPS19 PE 1 SV 2
blastp_uniprot_sprot sp|Q9FNR1|RBG3_ARATH 1 115 + 115 Gaps:4 38.51 309 52.10 2e-37 Glycine-rich RNA-binding protein 3 mitochondrial OS Arabidopsis thaliana GN RBG3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C909|RBG5_ARATH 1 123 + 123 Gaps:3 41.52 289 56.67 6e-33 Glycine-rich RNA-binding protein 5 mitochondrial OS Arabidopsis thaliana GN RBG5 PE 2 SV 1
blastp_uniprot_sprot sp|Q43472|GRP_HORVU 37 115 + 79 none 49.07 161 60.76 8e-27 Glycine-rich RNA-binding protein blt801 OS Hordeum vulgare GN blt801 PE 1 SV 1
blastp_uniprot_sprot sp|O89086|RBM3_MOUSE 33 112 + 80 Gaps:2 53.59 153 57.32 8e-24 Putative RNA-binding protein 3 OS Mus musculus GN Rbm3 PE 2 SV 1
blastp_uniprot_sprot sp|P98179|RBM3_HUMAN 33 112 + 80 Gaps:2 52.23 157 57.32 1e-23 Putative RNA-binding protein 3 OS Homo sapiens GN RBM3 PE 1 SV 1
blastp_uniprot_sprot sp|Q925G0|RBM3_RAT 33 120 + 88 Gaps:2 58.06 155 53.33 2e-23 Putative RNA-binding protein 3 OS Rattus norvegicus GN Rbm3 PE 1 SV 2
blastp_uniprot_sprot sp|Q99070|GRP2_SORBI 37 112 + 76 none 45.24 168 56.58 1e-22 Glycine-rich RNA-binding protein 2 OS Sorghum bicolor GN GRP2 PE 2 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 37 144 108 PTHR24012 none none none
Gene3D 33 131 99 G3DSA:3.30.70.330 none none IPR012677
ProSiteProfiles 36 114 79 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
Pfam 38 108 71 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
SMART 37 110 74 SM00360 none RNA recognition motif IPR000504
SUPERFAMILY 25 141 117 SSF54928 none none none

0 Localization

0 Qtllist

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 33   Mitochondrion 4 0.048 0.641 NON-PLANT 33