Protein : Qrob_P0041400.2 Q. robur
Protein Identifier  ? Qrob_P0041400.2 Organism . Name  Quercus robur
Score  100.1 Score Type  egn
Protein Description  (M=2) K08057 - calreticulin Gene Prediction Quality  validated
Protein length 

Sequence

Length: 442  
Kegg Orthology  K08057
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005783 endoplasmic reticulum The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
GO:0006457 protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
GO:0051082 unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
GO:0005509 calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|eus:EUTSA_v10023481mg 5 424 + 420 Gaps:1 99.05 423 79.00 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0013s01090g 8 424 + 417 Gaps:8 98.79 414 81.42 0.0 POPTRDRAFT_729432 calreticulin family protein
blastp_kegg lcl|pvu:PHAVU_007G200800g 1 415 + 415 Gaps:3 98.10 420 85.44 0.0 hypothetical protein
blastp_kegg lcl|eus:EUTSA_v10007717mg 9 367 + 359 Gaps:1 84.63 423 84.08 0.0 hypothetical protein
blastp_kegg lcl|cit:102618403 5 367 + 363 none 86.84 418 85.95 0.0 calreticulin-like
blastp_kegg lcl|gmx:100811997 1 422 + 422 Gaps:3 99.29 422 83.05 0.0 calreticulin-like
blastp_kegg lcl|aly:ARALYDRAFT_682855 5 409 + 405 Gaps:2 96.89 418 76.79 0.0 hypothetical protein
blastp_kegg lcl|vvi:100264203 12 424 + 413 Gaps:3 97.85 419 78.78 0.0 calreticulin-like
blastp_kegg lcl|tcc:TCM_026754 1 410 + 410 Gaps:2 95.55 427 83.09 0.0 Calreticulin 1b isoform 1
blastp_kegg lcl|cic:CICLE_v10001298mg 5 361 + 357 none 99.72 358 85.71 0.0 hypothetical protein
blastp_pdb 3rg0_A 28 379 + 352 Gaps:40 95.78 332 53.46 8e-103 mol:protein length:332 Calreticulin
blastp_pdb 1jhn_A 23 365 + 343 Gaps:61 94.81 424 36.57 3e-64 mol:protein length:424 calnexin
blastp_pdb 3pow_A 28 379 + 352 Gaps:9 95.09 265 53.17 2e-62 mol:protein length:265 calreticulin
blastp_pdb 3pos_C 28 379 + 352 Gaps:9 95.09 265 53.17 2e-62 mol:protein length:265 Calreticulin
blastp_pdb 3pos_B 28 379 + 352 Gaps:9 95.09 265 53.17 2e-62 mol:protein length:265 Calreticulin
blastp_pdb 3pos_A 28 379 + 352 Gaps:9 95.09 265 53.17 2e-62 mol:protein length:265 Calreticulin
blastp_pdb 3o0x_B 28 379 + 352 Gaps:9 92.67 273 52.96 8e-62 mol:protein length:273 Calreticulin
blastp_pdb 3o0x_A 28 379 + 352 Gaps:9 92.67 273 52.96 8e-62 mol:protein length:273 Calreticulin
blastp_pdb 3o0w_A 28 379 + 352 Gaps:9 92.67 273 52.96 8e-62 mol:protein length:273 Calreticulin
blastp_pdb 3o0v_A 28 379 + 352 Gaps:9 92.67 273 52.96 8e-62 mol:protein length:273 Calreticulin
blastp_uniprot_sprot sp|Q9XF98|CALR_PRUAR 27 407 + 381 Gaps:2 90.02 421 85.75 0.0 Calreticulin OS Prunus armeniaca PE 2 SV 1
blastp_uniprot_sprot sp|O81919|CALR_BETVU 7 383 + 377 none 90.62 416 86.74 0.0 Calreticulin OS Beta vulgaris PE 2 SV 1
blastp_uniprot_sprot sp|O04151|CALR1_ARATH 5 383 + 379 Gaps:1 88.94 425 82.80 0.0 Calreticulin-1 OS Arabidopsis thaliana GN CRT1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ZPP1|CALR_BERST 1 411 + 411 Gaps:10 96.39 416 81.80 0.0 Calreticulin OS Berberis stolonifera PE 2 SV 1
blastp_uniprot_sprot sp|P93508|CALR_RICCO 22 360 + 339 none 81.69 415 87.61 0.0 Calreticulin OS Ricinus communis PE 2 SV 1
blastp_uniprot_sprot sp|Q38858|CALR2_ARATH 5 383 + 379 Gaps:1 89.15 424 82.01 0.0 Calreticulin-2 OS Arabidopsis thaliana GN CRT2 PE 1 SV 3
blastp_uniprot_sprot sp|Q40401|CALR_NICPL 1 360 + 360 Gaps:1 86.78 416 83.38 0.0 Calreticulin OS Nicotiana plumbaginifolia GN CAL1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SLY8|CALR_ORYSJ 26 367 + 342 none 80.66 424 83.92 0.0 Calreticulin OS Oryza sativa subsp. japonica GN Os07g0246200 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SP22|CALR_MAIZE 26 366 + 341 none 81.19 420 79.18 0.0 Calreticulin OS Zea mays GN CRT PE 2 SV 1
blastp_uniprot_sprot sp|O04153|CALR3_ARATH 10 380 + 371 none 87.50 424 59.30 1e-166 Calreticulin-3 OS Arabidopsis thaliana GN CRT3 PE 2 SV 2

23 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 208 323 116 SSF63887 none none IPR009033
Phobius 10 21 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SUPERFAMILY 23 225 203 SSF49899 none none IPR013320
ProSitePatterns 215 227 13 PS00805 none Calreticulin family repeated motif signature. IPR018124
Pfam 29 340 312 PF00262 none Calreticulin family IPR001580
Phobius 22 26 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
ProSitePatterns 105 120 16 PS00803 none Calreticulin family signature 1. IPR018124
PIRSF 7 422 416 PIRSF002356 none none IPR009169
PANTHER 3 423 421 PTHR11073 none none IPR001580
Coils 359 380 22 Coil none none none
ProSitePatterns 137 145 9 PS00804 none Calreticulin family signature 2. IPR018124
ProSitePatterns 250 262 13 PS00805 none Calreticulin family repeated motif signature. IPR018124
PRINTS 107 125 19 PR00626 none Calreticulin signature IPR001580
PRINTS 133 149 17 PR00626 none Calreticulin signature IPR001580
PRINTS 288 307 20 PR00626 none Calreticulin signature IPR001580
PRINTS 250 272 23 PR00626 none Calreticulin signature IPR001580
PRINTS 321 341 21 PR00626 none Calreticulin signature IPR001580
PRINTS 222 235 14 PR00626 none Calreticulin signature IPR001580
Gene3D 21 246 226 G3DSA:2.60.120.200 none none IPR013320
Phobius 1 9 9 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 27 441 415 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 26 26 SIGNAL_PEPTIDE none Signal peptide region none
Gene3D 285 308 24 G3DSA:2.10.250.10 none none IPR009033

3 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 26 25
SignalP_EUK 1 26 25
SignalP_GRAM_NEGATIVE 1 26 25

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 26   Secretory pathway 1 0.963 0.109 NON-PLANT 26