Protein : Qrob_P0041120.2 Q. robur
Protein Identifier  ? Qrob_P0041120.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K12848 - U4/U6.U5 tri-snRNP component SNU23 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 204  
Kegg Orthology  K12848
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.

16 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103494358 1 203 + 203 Gaps:1 100.00 202 87.62 8e-105 zinc finger matrin-type protein 2
blastp_kegg lcl|tcc:TCM_026747 1 203 + 203 Gaps:1 100.00 202 85.64 3e-103 C2H2 and C2HC zinc fingers superfamily protein isoform 1
blastp_kegg lcl|csv:101206387 1 203 + 203 Gaps:1 100.00 202 86.63 1e-102 zinc finger matrin-type protein 2-like
blastp_kegg lcl|pop:POPTR_0013s01160g 11 202 + 192 Gaps:1 95.54 202 80.31 4e-97 POPTRDRAFT_729449 hypothetical protein
blastp_kegg lcl|vvi:100263190 1 203 + 203 Gaps:1 100.00 204 86.76 2e-96 zinc finger matrin-type protein 2-like
blastp_kegg lcl|bdi:100829988 9 203 + 195 Gaps:1 97.51 201 81.63 7e-96 zinc finger matrin-type protein 2-like
blastp_kegg lcl|sot:102601798 1 203 + 203 Gaps:1 100.00 202 81.19 1e-95 zinc finger matrin-type protein 2-like
blastp_kegg lcl|sly:101244419 1 203 + 203 Gaps:1 100.00 202 81.19 2e-95 zinc finger matrin-type protein 2-like
blastp_kegg lcl|dosa:Os03t0831900-01 9 203 + 195 Gaps:2 97.52 202 83.76 2e-95 Os03g0831900 Zinc finger U1-type domain containing protein.
blastp_kegg lcl|osa:4334674 9 203 + 195 Gaps:2 97.52 202 83.76 2e-95 Os03g0831900
blastp_uniprot_sprot sp|Q9CPW7|ZMAT2_MOUSE 15 203 + 189 Gaps:9 93.47 199 54.84 1e-50 Zinc finger matrin-type protein 2 OS Mus musculus GN Zmat2 PE 2 SV 1
blastp_uniprot_sprot sp|Q96NC0|ZMAT2_HUMAN 15 203 + 189 Gaps:9 93.47 199 54.84 1e-50 Zinc finger matrin-type protein 2 OS Homo sapiens GN ZMAT2 PE 1 SV 1
blastp_uniprot_sprot sp|P34670|YO14_CAEEL 16 203 + 188 Gaps:17 49.39 407 39.30 1e-35 Putative zinc finger protein ZK686.4 OS Caenorhabditis elegans GN ZK686.4 PE 4 SV 1
blastp_uniprot_sprot sp|Q09776|SNU23_SCHPO 61 201 + 141 Gaps:13 83.24 173 34.03 3e-15 U4/U6.U5 small nuclear ribonucleoprotein component snu23 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN snu23 PE 3 SV 4
blastp_uniprot_sprot sp|Q12368|SNU23_YEAST 11 203 + 193 Gaps:31 100.00 194 29.90 6e-11 23 kDa U4/U6.U5 small nuclear ribonucleoprotein component OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SNU23 PE 1 SV 1
rpsblast_kog gnl|CDD|39925 13 203 + 191 Gaps:5 96.37 193 60.22 2e-45 KOG4727 KOG4727 KOG4727 U1-like Zn-finger protein [General function prediction only].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 85 109 25 PF12874 none Zinc-finger of C2H2 type none
SUPERFAMILY 80 123 44 SSF57667 none none none
SMART 82 116 35 SM00451 none U1-like zinc finger IPR003604
PANTHER 10 203 194 PTHR23067 none none none
Coils 25 46 22 Coil none none none
Coils 153 185 33 Coil none none none
PANTHER 10 203 194 PTHR23067:SF38 none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting