Protein : Qrob_P0041080.2 Q. robur
Protein Identifier  ? Qrob_P0041080.2 Organism . Name  Quercus robur
Score  95.2 Score Type  egn
Protein Description  (M=1) KOG0331//KOG0333//KOG0344//KOG0351//KOG0352//KOG0353 - ATP-dependent RNA helicase [RNA processing and modification]. // U5 snRNP-like RNA helicase subunit [RNA processing and modification]. // ATP-dependent RNA helicase [RNA processing and modification]. // ATP-dependent DNA helicase [Replication recombination and repair]. // ATP-dependent DNA helicase [Replication recombination and repair]. // ATP-dependent DNA helicase [General function prediction only]. Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 680  
Kegg Orthology  K10901
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0008026 ATP-dependent helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO:0006310 DNA recombination Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103343975 1 678 + 678 Gaps:88 98.84 601 82.49 0.0 ATP-dependent DNA helicase Q-like 1
blastp_kegg lcl|pxb:103962291 1 679 + 679 Gaps:80 99.67 605 79.93 0.0 ATP-dependent DNA helicase Q-like 1
blastp_kegg lcl|tcc:TCM_026744 1 678 + 678 Gaps:70 100.00 614 79.97 0.0 RECQ helicase l1
blastp_kegg lcl|mdm:103450867 1 679 + 679 Gaps:80 99.67 605 79.27 0.0 ATP-dependent DNA helicase Q-like 1
blastp_kegg lcl|pper:PRUPE_ppa015447mg 1 678 + 678 Gaps:98 98.82 591 82.71 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_007G200200g 3 677 + 675 Gaps:85 98.35 606 79.70 0.0 hypothetical protein
blastp_kegg lcl|cit:102615882 1 678 + 678 Gaps:56 99.84 627 75.56 0.0 ATP-dependent DNA helicase Q-like 1-like
blastp_kegg lcl|cic:CICLE_v10000586mg 1 678 + 678 Gaps:56 99.84 627 75.24 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0005s01970g 1 678 + 678 Gaps:101 99.83 588 80.07 0.0 hypothetical protein
blastp_kegg lcl|gmx:100806070 3 676 + 674 Gaps:91 98.20 610 79.80 0.0 ATP-dependent DNA helicase Q-like 1-like
blastp_pdb 2wwy_B 233 679 + 447 Gaps:55 67.34 591 44.97 8e-100 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 2wwy_A 233 679 + 447 Gaps:55 67.34 591 44.97 8e-100 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 2v1x_B 233 679 + 447 Gaps:55 67.34 591 44.97 8e-100 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 2v1x_A 233 679 + 447 Gaps:55 67.34 591 44.97 8e-100 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 1oyy_A 234 674 + 441 Gaps:65 72.66 523 46.58 2e-86 mol:protein length:523 ATP-dependent DNA helicase
blastp_pdb 1oyw_A 234 674 + 441 Gaps:65 72.66 523 46.58 2e-86 mol:protein length:523 ATP-dependent DNA helicase
blastp_uniprot_sprot sp|Q9FT74|RQL1_ARATH 1 677 + 677 Gaps:89 100.00 606 70.79 0.0 ATP-dependent DNA helicase Q-like 1 OS Arabidopsis thaliana GN RECQL1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FT70|RQL4B_ARATH 225 674 + 450 Gaps:57 36.43 1150 47.73 2e-114 ATP-dependent DNA helicase Q-like 4B OS Arabidopsis thaliana GN RECQL4B PE 2 SV 1
blastp_uniprot_sprot sp|Q8L840|RQL4A_ARATH 226 679 + 454 Gaps:57 35.61 1188 47.28 5e-114 ATP-dependent DNA helicase Q-like 4A OS Arabidopsis thaliana GN RECQL4A PE 2 SV 1
blastp_uniprot_sprot sp|Q6AYJ1|RECQ1_RAT 233 679 + 447 Gaps:55 64.09 621 45.73 3e-103 ATP-dependent DNA helicase Q1 OS Rattus norvegicus GN Recql PE 2 SV 1
blastp_uniprot_sprot sp|Q9VGI8|BLM_DROME 234 675 + 442 Gaps:47 27.10 1487 47.64 3e-102 Bloom syndrome protein homolog OS Drosophila melanogaster GN Blm PE 1 SV 1
blastp_uniprot_sprot sp|Q9DEY9|BLM_XENLA 234 675 + 442 Gaps:51 29.69 1364 47.41 3e-101 Bloom syndrome protein homolog OS Xenopus laevis GN blm PE 2 SV 1
blastp_uniprot_sprot sp|Q9Z129|RECQ1_MOUSE 233 679 + 447 Gaps:55 61.42 648 45.48 3e-101 ATP-dependent DNA helicase Q1 OS Mus musculus GN Recql PE 1 SV 2
blastp_uniprot_sprot sp|O88700|BLM_MOUSE 234 677 + 444 Gaps:51 28.74 1416 48.65 5e-101 Bloom syndrome protein homolog OS Mus musculus GN Blm PE 1 SV 1
blastp_uniprot_sprot sp|P35187|SGS1_YEAST 239 679 + 441 Gaps:50 27.57 1447 44.61 7e-101 ATP-dependent helicase SGS1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SGS1 PE 1 SV 1
blastp_uniprot_sprot sp|O18017|BLM_CAEEL 234 674 + 441 Gaps:44 40.59 988 46.38 4e-100 Bloom syndrome protein homolog OS Caenorhabditis elegans GN him-6 PE 2 SV 2
rpsblast_cdd gnl|CDD|129701 234 678 + 445 Gaps:51 84.68 470 48.49 1e-123 TIGR00614 recQ_fam ATP-dependent DNA helicase RecQ family. All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination recombinational repair and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999 Ph.D. Thesis Stanford University).
rpsblast_cdd gnl|CDD|178682 227 679 + 453 Gaps:57 35.31 1195 48.82 1e-115 PLN03137 PLN03137 ATP-dependent DNA helicase Q4-like Provisional.
rpsblast_cdd gnl|CDD|30860 233 677 + 445 Gaps:55 66.10 590 45.90 1e-114 COG0514 RecQ Superfamily II DNA helicase [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|130456 234 674 + 441 Gaps:66 64.47 591 45.41 1e-106 TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions as well as more distantly related bacterial helicases related to RecQ.

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 609 677 69 G3DSA:1.10.10.10 none none IPR011991
SUPERFAMILY 278 426 149 SSF52540 none none IPR027417
SUPERFAMILY 457 614 158 SSF52540 none none IPR027417
TIGRFAM 233 419 187 TIGR00614 none recQ_fam: ATP-dependent DNA helicase, RecQ family IPR004589
TIGRFAM 435 678 244 TIGR00614 none recQ_fam: ATP-dependent DNA helicase, RecQ family IPR004589
Pfam 241 411 171 PF00270 none DEAD/DEAH box helicase IPR011545
ProSiteProfiles 472 634 163 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
ProSiteProfiles 247 423 177 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
PANTHER 233 419 187 PTHR13710 none none none
ProSitePatterns 362 371 10 PS00690 none DEAH-box subfamily ATP-dependent helicases signature. IPR002464
PANTHER 445 678 234 PTHR13710:SF70 none none none
Gene3D 455 608 154 G3DSA:3.40.50.300 none none IPR027417
SMART 235 433 199 SM00487 none DEAD-like helicases superfamily IPR014001
PANTHER 445 678 234 PTHR13710 none none none
Pfam 508 593 86 PF00271 none Helicase conserved C-terminal domain IPR001650
Gene3D 234 424 191 G3DSA:3.40.50.300 none none IPR027417
PANTHER 233 419 187 PTHR13710:SF70 none none none
SMART 500 594 95 SM00490 none helicase superfamily c-terminal domain IPR001650

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting