Protein : Qrob_P0040740.2 Q. robur
Protein Identifier  ? Qrob_P0040740.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=11) PTHR22595:SF37 - CHITINASE-RELATED (PTHR22595:SF37) Code Enzyme  EC:3.2.1.14
Gene Prediction Quality  validated Protein length 

Sequence

Length: 259  
Kegg Orthology  K01183
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004568 chitinase activity Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins.
GO:0006032 chitin catabolic process The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.
GO:0016998 cell wall macromolecule catabolic process The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100245803 1 258 + 258 Gaps:20 100.00 274 59.85 6e-104 endochitinase PR4-like
blastp_kegg lcl|pop:POPTR_0013s12870g 6 258 + 253 Gaps:22 98.55 275 62.36 8e-104 class IV chitinase family protein
blastp_kegg lcl|mdm:103432770 6 258 + 253 Gaps:23 100.00 272 60.66 1e-103 endochitinase PR4-like
blastp_kegg lcl|vvi:100256098 1 258 + 258 Gaps:20 100.00 274 59.49 4e-103 endochitinase PR4-like
blastp_kegg lcl|pxb:103957731 51 258 + 208 Gaps:2 89.27 233 71.63 5e-102 endochitinase PR4-like
blastp_kegg lcl|pxb:103957707 51 258 + 208 Gaps:2 89.27 233 71.63 5e-102 endochitinase PR4-like
blastp_kegg lcl|pxb:103957750 52 258 + 207 Gaps:2 88.84 233 71.98 8e-102 endochitinase PR4-like
blastp_kegg lcl|tcc:TCM_019914 6 258 + 253 Gaps:21 98.17 273 59.70 1e-101 Carrot EP3-3 chitinase
blastp_kegg lcl|ath:AT3G54420 11 258 + 248 Gaps:27 100.00 273 57.51 4e-100 EP3 chitinase class IV
blastp_kegg lcl|pop:POPTR_0019s12360g 10 258 + 249 Gaps:20 97.09 275 58.43 3e-99 POPTRDRAFT_574380 hypothetical protein
blastp_pdb 3hbh_A 56 258 + 203 Gaps:9 100.00 204 55.39 7e-66 mol:protein length:204 Class IV chitinase Chia4-Pa2
blastp_pdb 3hbe_X 56 258 + 203 Gaps:9 100.00 204 55.39 7e-66 mol:protein length:204 Class IV chitinase Chia4-Pa2
blastp_pdb 3hbd_A 56 258 + 203 Gaps:9 100.00 204 55.39 7e-66 mol:protein length:204 Class IV chitinase Chia4-Pa2
blastp_pdb 2z37_D 60 258 + 199 Gaps:37 95.08 244 37.50 5e-45 mol:protein length:244 Chitinase
blastp_pdb 2z37_C 60 258 + 199 Gaps:37 95.08 244 37.50 5e-45 mol:protein length:244 Chitinase
blastp_pdb 2z37_B 60 258 + 199 Gaps:37 95.08 244 37.50 5e-45 mol:protein length:244 Chitinase
blastp_pdb 2z37_A 60 258 + 199 Gaps:37 95.08 244 37.50 5e-45 mol:protein length:244 Chitinase
blastp_pdb 2z38_A 60 258 + 199 Gaps:37 93.93 247 37.50 6e-45 mol:protein length:247 Chitinase
blastp_pdb 2z39_B 60 258 + 199 Gaps:37 94.31 246 37.07 3e-44 mol:protein length:246 Chitinase
blastp_pdb 2z39_A 60 258 + 199 Gaps:37 94.31 246 37.07 3e-44 mol:protein length:246 Chitinase
blastp_uniprot_sprot sp|Q7Y1Z0|CHI5_ORYSJ 55 258 + 204 Gaps:2 70.83 288 66.67 1e-90 Chitinase 5 OS Oryza sativa subsp. japonica GN Cht5 PE 2 SV 1
blastp_uniprot_sprot sp|O04138|CHI4_ORYSJ 55 258 + 204 Gaps:2 71.58 285 65.69 4e-90 Chitinase 4 OS Oryza sativa subsp. japonica GN Cht4 PE 2 SV 2
blastp_uniprot_sprot sp|P27054|CHI4_PHAVU 26 258 + 233 Gaps:23 93.33 270 54.76 3e-82 Endochitinase PR4 OS Phaseolus vulgaris GN CHI4 PE 2 SV 1
blastp_uniprot_sprot sp|Q6K8R2|CHI6_ORYSJ 47 258 + 212 Gaps:6 79.70 271 59.72 2e-81 Chitinase 6 OS Oryza sativa subsp. japonica GN Cht6 PE 2 SV 1
blastp_uniprot_sprot sp|P29022|CHIA_MAIZE 55 258 + 204 Gaps:3 72.50 280 60.59 3e-77 Endochitinase A OS Zea mays PE 1 SV 1
blastp_uniprot_sprot sp|P42820|CHIP_BETVU 9 258 + 250 Gaps:39 98.26 288 47.35 3e-74 Acidic endochitinase SP2 OS Beta vulgaris GN SP2 PE 1 SV 1
blastp_uniprot_sprot sp|P80052|CHIT_DIOJA 48 258 + 211 Gaps:7 85.60 250 55.14 1e-71 Acidic endochitinase OS Dioscorea japonica PE 1 SV 2
blastp_uniprot_sprot sp|P29023|CHIB_MAIZE 15 258 + 244 Gaps:25 98.51 269 47.17 1e-71 Endochitinase B (Fragment) OS Zea mays PE 1 SV 1
blastp_uniprot_sprot sp|Q06209|CHI4_BRANA 20 258 + 239 Gaps:30 95.15 268 48.24 1e-71 Basic endochitinase CHB4 OS Brassica napus PE 1 SV 2
blastp_uniprot_sprot sp|P24091|CHI2_TOBAC 60 258 + 199 Gaps:39 71.60 324 43.53 1e-45 Endochitinase B OS Nicotiana tabacum GN CHN50 PE 1 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 60 258 199 PF00182 "KEGG:00520+3.2.1.14","MetaCyc:PWY-6902" Chitinase class I IPR000726
PANTHER 52 258 207 PTHR22595:SF37 none none none
Phobius 1 30 30 SIGNAL_PEPTIDE none Signal peptide region none
SUPERFAMILY 56 258 203 SSF53955 none none IPR023346
PANTHER 52 258 207 PTHR22595 none none none
ProSitePatterns 193 203 11 PS00774 "KEGG:00520+3.2.1.14","MetaCyc:PWY-6902" Chitinases family 19 signature 2. IPR000726
PIRSF 11 258 248 PIRSF001060 "KEGG:00520+3.2.1.14","MetaCyc:PWY-6902" none IPR016283
Phobius 31 258 228 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSitePatterns 77 99 23 PS00773 "KEGG:00520+3.2.1.14","MetaCyc:PWY-6902" Chitinases family 19 signature 1. IPR000726
Gene3D 59 124 66 G3DSA:1.10.530.10 none none none
Gene3D 188 258 71 G3DSA:1.10.530.10 none none none
Phobius 11 22 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Gene3D 134 187 54 G3DSA:3.30.20.10 none none none
Phobius 23 30 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 10 10 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none

3 Localization

Analysis Start End Length
SignalP_EUK 1 30 29
SignalP_GRAM_POSITIVE 1 30 29
SignalP_GRAM_NEGATIVE 1 30 29

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 30   Secretory pathway 4 0.468 0.207 NON-PLANT 30